PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0243600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 535aa    MW: 60532.8 Da    PI: 8.9509
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0243600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.4e-15371161297
                        HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        + + +++p +f++++ggk   + t++le+++g  + v++  + + ++++l+ GW+ Fv+a+++keg++++F+++++s+    v ++
  ORGLA03G0243600.1  37 SMHSMIMPDRFVSHFGGK--IPGTIKLESPNGILYVVEV--TECMNKTLLQCGWEAFVDAHNIKEGESLLFRHIENSRY--EVLIL 116
                        456799******888888..5669***************..*******************************9986655..66665 PP
2B341.52.4e-132463271697
                        EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                 B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                        lv++ ++a+ h   ++e+ t+tl+ +s  ++W  ++  r  ++ ++l++ W++Fv++n L+e D+++F  ++  ++f ++v+++
  ORGLA03G0243600.1 246 LVISSRYASVHF--PRETATITLQRPSKrKKWYPRFYKRIDKSDHMLRGQWQNFVHDNCLQEEDICLFVPTKGgRNFVFTVHLL 327
                        799999*99997..456779*****66659******66777777*************************776558887777766 PP
3B347.82.5e-154445261698
                        EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        l l+ ++a+++   +k +++tl+l + +g  W+++l +     k++r +lt+GW++F+++n+L++gDf++F+l++ ++ ++ v++++
  ORGLA03G0243600.1 444 LELSSRYAASYlP-DK-NHQTLVL-QCKGMIWQINLVVrrrYTKGKRWFLTAGWRKFAHDNRLRVGDFCLFELKK-KKLTMEVHIIS 526
                        7788999999952.33.3346665.569********7754433334478***********************987.99999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-2023121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.13926119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-1727120IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-1627117No hitNo description
SMARTSM010191.5E-729119IPR003340B3 DNA binding domain
PfamPF023624.5E-1337115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-18223329IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-18223327IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.5E-4230330IPR003340B3 DNA binding domain
CDDcd100179.63E-19230325No hitNo description
PROSITE profilePS5086310.25231330IPR003340B3 DNA binding domain
PfamPF023621.5E-11246327IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-18419526IPR015300DNA-binding pseudobarrel domain
CDDcd100173.23E-18423526No hitNo description
PROSITE profilePS5086311.998429528IPR003340B3 DNA binding domain
SMARTSM010191.1E-9429528IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-16442525IPR015300DNA-binding pseudobarrel domain
PfamPF023625.8E-13444526IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MAGGNTHRKK SCACCKEYLE HLGGKMRCFL RRMAADSMHS MIMPDRFVSH FGGKIPGTIK  60
LESPNGILYV VEVTECMNKT LLQCGWEAFV DAHNIKEGES LLFRHIENSR YEVLILDSDD  120
CEKVFSCAGT RNGSCVQDKT VDPVDSSGSS SNDTTQSSRS RNTENLTAMC SSSEKSGEDS  180
PSGYEFHESV EPQTPSGSDY VLSRRTYLSE AQKERVVAHI QDIQPEITVF VAVMKKCNLQ  240
SPAPYLVISS RYASVHFPRE TATITLQRPS KRKKWYPRFY KRIDKSDHML RGQWQNFVHD  300
NCLQEEDICL FVPTKGGRNF VFTVHLLQAE ATHSRDGTDV HKIGSSQNKR NSKMASQVHI  360
KEAPGGDVSS ESNKHGVSHE SLESEDSDGP SEPPYISSMR RRLSQLQKKT VEEKVRAIQS  420
EIPICVATIS KLAGSGGKGK FRGLELSSRY AASYLPDKNH QTLVLQCKGM IWQINLVVRR  480
RYTKGKRWFL TAGWRKFAHD NRLRVGDFCL FELKKKKLTM EVHIISNLQR YPEVE
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0243600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1072060.0AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629380.10.0B3 domain-containing protein Os03g0619800
RefseqXP_015629381.10.0B3 domain-containing protein Os03g0619800
SwissprotQ6AV210.0Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLI1PDJ00.0I1PDJ0_ORYGL; Uncharacterized protein
STRINGORGLA03G0243600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.13e-12B3 family protein