PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0221500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 255aa    MW: 28538 Da    PI: 9.5556
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0221500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.81e-112311342
                       HHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
             SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifss 42
                       f kR++ ++KKA+ELS+L +++++v+++++
  ORGLA03G0221500.1  2 FKKRQKSLMKKASELSTLYGVDACVVMYAE 31
                       89**************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500668.886131IPR002100Transcription factor, MADS-box
PfamPF003193.4E-11231IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.07E-14276IPR002100Transcription factor, MADS-box
CDDcd002666.25E-15257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MFKKRQKSLM KKASELSTLY GVDACVVMYA EGEAQPMMVW PSVPEARRVI ERFRALPQKD  60
QYENTTNLEG FLKQRITNLQ EKVDKAKHEN DELETKLLLL NSLDGCLPSL VGLTVKQITS  120
LNSMVEERLK KLRGNGLLAT PVPTSSKKKI IWDVRYNLKA RYVTDDSAKN GRLPXVAVYP  180
GNLLPTPELA GILTLPLPPL GAVVVFPSHS HRCMSSVFPR FACQRVESVV SEVSSCEEKS  240
LEDCLKKQGK SHIPP
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0221500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0933120.0AC093312.7 Oryza sativa chromosome 3 BAC OSJNBa0095N06 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879443.12e-99agamous-like MADS-box protein AGL80
TrEMBLI1PCW90.0I1PCW9_ORYGL; Uncharacterized protein
STRINGORGLA03G0221500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27810.19e-15M-type_MADS family protein