PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0208800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 603aa    MW: 64261.8 Da    PI: 6.3708
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0208800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.54e-921896022374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilk 92 
                         +lL+ecA+av+ +d +++q+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ ++++  s +++  + l f+e+sP+  
  ORGLA03G0208800.1 189 AQLLMECARAVAGRDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARLTTSGPRTLRTLATASDRNA-SFDSTRRTALkFQELSPWTP 279
                        589************************************************************99988744.44444444446********* PP

               GRAS  93 fshltaNqaIleavege...................ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleet 161
                        f+h++aN aIle++ ++                   +r+Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v++ ++     ++ ++e+
  ORGLA03G0208800.1 280 FGHVAANGAILESFLEAaaagaaaasssssssstppTRLHILDLSNTFCTQWPTLLEALATRSsDDTPHLSITTVVPTAAPsaaAQRVMREI 371
                        ************986655666677777888888888899************************8889********996655788999***** PP

               GRAS 162 gerLakfAeelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                        g+rL+kfA+ +gvpf+f+++++  +l+dl+l +L++++     alaVn+v +l  +          rd+++  +++l+P+vv+vve+ead+ 
  ORGLA03G0208800.1 372 GQRLEKFARLMGVPFSFRAVHHAgDLADLDLAALDLREggaTAALAVNCVNALRGVA-------RGRDAFVASLRRLEPRVVTVVEEEADLA 456
                        *******************97767**************8877899********9998.......5589********************9997 PP

               GRAS 250 se............sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
                        ++             F++ f e l+++sa +dsle+++p++s+er ++Er+ +gr+iv++v+c  +++ er+et+++W +r+++aGF+p+++
  ORGLA03G0208800.1 457 APeadasseadtdaAFVKVFGEGLRFFSAYMDSLEESFPKTSNERLSLERA-VGRAIVDLVSCPASQSAERRETAASWARRMRSAGFSPAAF 547
                        76789999999999*************************************.**************************************** PP

               GRAS 330 sekaakqaklllrkvksdgyrveee...........sgslvlgWkdrpLvsvSaWr 374
                        se++a+++++llr++k +g+++ +             + ++l Wk++p+v++SaW+
  ORGLA03G0208800.1 548 SEDVADDVRSLLRRYK-EGWSMRDAggatddaagaaAAGAFLAWKEQPVVWASAWK 602
                        ****************.888988555556667777688899**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.998162572IPR005202Transcription factor GRAS
PfamPF035141.4E-89189602IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MDTLFRLVSL HHHHHHQHAA SPSPPDQPHK SYPSSRGSTS SPSSHHTHNH TYYHHSHSHY  60
NNNSNTNYYY QGGGGGGGGY YYAEEQQPAA YLEECGNGHQ FYMDEDFSSS SSSRQFHLGT  120
GAPSSAPVPP PPSATTSSAG GHGLFEAADF SFPQVDISLD FGGSPAVSSS SGAGAGTGAA  180
PSSSGRWAAQ LLMECARAVA GRDSQRVQQL MWMLNELASP YGDVDQKLAS YFLQGLFARL  240
TTSGPRTLRT LATASDRNAS FDSTRRTALK FQELSPWTPF GHVAANGAIL ESFLEAAAAG  300
AAAASSSSSS SSTPPTRLHI LDLSNTFCTQ WPTLLEALAT RSSDDTPHLS ITTVVPTAAP  360
SAAAQRVMRE IGQRLEKFAR LMGVPFSFRA VHHAGDLADL DLAALDLREG GATAALAVNC  420
VNALRGVARG RDAFVASLRR LEPRVVTVVE EEADLAAPEA DASSEADTDA AFVKVFGEGL  480
RFFSAYMDSL EESFPKTSNE RLSLERAVGR AIVDLVSCPA SQSAERRETA ASWARRMRSA  540
GFSPAAFSED VADDVRSLLR RYKEGWSMRD AGGATDDAAG AAAAGAFLAW KEQPVVWASA  600
WKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-1591376034420Protein SHORT-ROOT
5b3h_E1e-1591376034420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0208800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629293.10.0protein SHORT-ROOT 2
SwissprotA2XIA80.0SHR2_ORYSI; Protein SHORT-ROOT 2
TrEMBLI1PCJ20.0I1PCJ2_ORYGL; Uncharacterized protein
STRINGORGLA03G0208800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-132GRAS family protein