PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0177400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 441aa    MW: 45943.8 Da    PI: 10.5819
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0177400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.46.1e-3582181297
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkif 89 
                        lfqrlw+eeDeiv+L+++ +f+a++g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ +++g+++sf+++h+q if
  ORGLA03G0177400.1  82 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVDRlRATGQSFSFRSPHEQAIF 173
                        79*************************9977778***************************************999**************** PP

             DUF573  90 elskkiWg 97 
                        e+++ iW+
  ORGLA03G0177400.1 174 EIARGIWR 181
                        *******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.2E-3083180IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MLPTVVDDPS AAAAAAVGAA ASSSFPDADV YGNGDSDDID FPSDPNHATT QAFSSAAAAA  60
AAAGPGGGGG AGSGSGGERR PLFQRLWTEE DEIVILRAFA EFTAQRGTAF ASHQYDTDPF  120
YEDMRRRLQL DFSKSQLVEK LRRLKRKYRN CVDRLRATGQ SFSFRSPHEQ AIFEIARGIW  180
RPTSDKHGRD ADSDDDALPD AAAAVAVPAP ANGEVRFPSS TRAQQRRGRR RRTAAAARRH  240
RHRRRCIRAA AALPTGSRAG ARQGGGRAPA LLPAGRGGHR HRARPRRGSR LGGGVGGGER  300
GGRHPGAAVQ GDGARHAHRR DGAAVAGAAG AGDPDERGEV EAAADPGAGG VPPAHRPAAG  360
PGEDGAGGAQ VHAAGDAVTS APHSTLSLSL TGKEDEGVCF ADRISRRGWD SRGIIMIIPC  420
VILIQVAKYS SVSLTFSASF T
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0177400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0826440.0AC082644.10 Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence.
GenBankAK2432080.0AK243208.1 Oryza sativa Japonica Group cDNA, clone: J100042A05, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632846.11e-163probable transcription factor At3g04930
TrEMBLI1PBM80.0I1PBM8_ORYGL; Uncharacterized protein
STRINGORGLA03G0177400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.26e-33DNA-binding storekeeper protein-related transcriptional regulator