PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA03G0176000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 177aa MW: 19943.6 Da PI: 10.2203 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.7 | 1.1e-12 | 49 | 101 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 +WT+eEd l+++ ++ G ++W+++a+ m +R++ qc++rw+++l ORGLA03G0176000.1 49 AWTPEEDACLARLAAENGFRHWRRVAEGMAaarsgrrPRRSPGQCRDRWRDHL 101 7*************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.652 | 42 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-10 | 46 | 103 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.29E-15 | 49 | 124 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-12 | 49 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-15 | 49 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.34E-5 | 49 | 101 | No hit | No description |
PROSITE profile | PS50090 | 5.935 | 102 | 156 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 177 aa Download sequence Send to blast |
MELQGLEQEA AVQPPASAAF PSSAEEAAAA ASPTSGGKRI VLRIRLPPAW TPEEDACLAR 60 LAAENGFRHW RRVAEGMAAA RSGRRPRRSP GQCRDRWRDH LARDVYHRPF TADDDAELAR 120 LLLKRDGDGE RSWKDISRAA YCRTSRGMRR RWGELRDSDA FLRKLWCPPP PPMQPSC |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA03G0176000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC213125 | 0.0 | AC213125.2 Oryza glaberrima clone OG_BBa0015M04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006645625.1 | 4e-59 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | I1PBL4 | 1e-122 | I1PBL4_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0176000.1 | 1e-123 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8360 | 13 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 3e-06 | myb domain protein 73 |