PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0176000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 177aa    MW: 19943.6 Da    PI: 10.2203
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0176000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-1249101348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 
                        +WT+eEd  l+++ ++ G ++W+++a+ m         +R++ qc++rw+++l
  ORGLA03G0176000.1  49 AWTPEEDACLARLAAENGFRHWRRVAEGMAaarsgrrPRRSPGQCRDRWRDHL 101
                        7*************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.65242105IPR017930Myb domain
SMARTSM007173.5E-1046103IPR001005SANT/Myb domain
SuperFamilySSF466892.29E-1549124IPR009057Homeodomain-like
PfamPF002491.9E-1249101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-1549118IPR009057Homeodomain-like
CDDcd001671.34E-549101No hitNo description
PROSITE profilePS500905.935102156IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MELQGLEQEA AVQPPASAAF PSSAEEAAAA ASPTSGGKRI VLRIRLPPAW TPEEDACLAR  60
LAAENGFRHW RRVAEGMAAA RSGRRPRRSP GQCRDRWRDH LARDVYHRPF TADDDAELAR  120
LLLKRDGDGE RSWKDISRAA YCRTSRGMRR RWGELRDSDA FLRKLWCPPP PPMQPSC
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0176000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2131250.0AC213125.2 Oryza glaberrima clone OG_BBa0015M04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645625.14e-59PREDICTED: transcription factor MYB44-like
TrEMBLI1PBL41e-122I1PBL4_ORYGL; Uncharacterized protein
STRINGORGLA03G0176000.11e-123(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-06myb domain protein 73