PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA03G0152700.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 403aa MW: 43492.1 Da PI: 8.6781

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA03G0152700.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.8	5e-54	9	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+v+yL+++++++++++ ++i++vdiyk++PwdLp+k++ +++ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ ORGLA03G0152700.1 9 LPPGFRFHPTDEELIVHYLRNRAASSPCPV-SIIADVDIYKFDPWDLPSKANYGDREWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPI 99 79**************************.89***********999999********************************** PP NAM 93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s+ ++e vg+kk Lvfykgr pkg+kt+W+mheyrl ORGLA03G0152700.1 100 HSSggaaTNESVGVKKALVFYKGRPPKGTKTNWIMHEYRL 139 977776777***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.15E-63	5	184	IPR003441	NAC domain
PROSITE profile	PS51005	60.575	9	184	IPR003441	NAC domain
Pfam	PF02365	2.1E-27	10	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MVLSNPAMLP PGFRFHPTDE ELIVHYLRNR AASSPCPVSI IADVDIYKFD PWDLPSKANY 60 GDREWYFFSP RDRKYPNGIR PNRAAGSGYW KATGTDKPIH SSGGAATNES VGVKKALVFY 120 KGRPPKGTKT NWIMHEYRLA AADAHAANTY RPMKFRNTSM RLIDRCAWIF VQLDDWVLCR 180 IYKKSSHASP LAVPPLSDHE QDEPCALEEN APLYAPSSSS AASMILQGAA AGAFPSLHAA 240 AAATQRTAMQ KIPSISDLLN EYSLSQLFDD GGAAAAAPLQ EMARQPDHHH HHQQQHALFG 300 HPVMNHFIAN NSMVQLAHLD PSSSAAASTS AGAVVEPPAV TGKRKRSSDG GEPTIQALPP 360 AAAAAKKPNG SCVGATFQIG SALQGSSLGL SHQMLLHSNM GMN

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MVLSNPAMLP PGFRFHPTDE ELIVHYLRNR AASSPCPVSI IADVDIYKFD PWDLPSKANY  60
GDREWYFFSP RDRKYPNGIR PNRAAGSGYW KATGTDKPIH SSGGAATNES VGVKKALVFY  120
KGRPPKGTKT NWIMHEYRLA AADAHAANTY RPMKFRNTSM RLIDRCAWIF VQLDDWVLCR  180
IYKKSSHASP LAVPPLSDHE QDEPCALEEN APLYAPSSSS AASMILQGAA AGAFPSLHAA  240
AAATQRTAMQ KIPSISDLLN EYSLSQLFDD GGAAAAAPLQ EMARQPDHHH HHQQQHALFG  300
HPVMNHFIAN NSMVQLAHLD PSSSAAASTS AGAVVEPPAV TGKRKRSSDG GEPTIQALPP  360
AAAAAKKPNG SCVGATFQIG SALQGSSLGL SHQMLLHSNM GMN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-70	9	188	20	172	NAC domain-containing protein 19
3swm_B	4e-70	9	188	20	172	NAC domain-containing protein 19
3swm_C	4e-70	9	188	20	172	NAC domain-containing protein 19
3swm_D	4e-70	9	188	20	172	NAC domain-containing protein 19
3swp_A	4e-70	9	188	20	172	NAC domain-containing protein 19
3swp_B	4e-70	9	188	20	172	NAC domain-containing protein 19
3swp_C	4e-70	9	188	20	172	NAC domain-containing protein 19
3swp_D	4e-70	9	188	20	172	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA03G0152700.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC126222	0.0	AC126222.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0014I10, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632401.1	0.0	NAC transcription factor 47
Swissprot	Q8H4S4	1e-84	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	I1PAY1	0.0	I1PAY1_ORYGL; Uncharacterized protein
STRING	ORGLA03G0152700.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1237	36	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	2e-82	NAC domain containing protein 47

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]