PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0152400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 358aa    MW: 39185.4 Da    PI: 5.811
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0152400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.51.8e-55211481129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdee+v++yL++k+ +++++   vi +vd++k+ePw+Lp+++k +ekewyfF+++d+ky+tg+r+nrat+sgyWkatgkdke+
  ORGLA03G0152400.1  21 LPPGFRFHPTDEEIVSHYLTPKALNHRFSS-GVIGDVDLNKCEPWHLPAMAKMGEKEWYFFCHKDRKYPTGTRTNRATESGYWKATGKDKEI 111
                        79*************************999.99***************988999************************************** PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        ++ +g lvg+kktLvfy grap+gekt Wvmhe+rle
  ORGLA03G0152400.1 112 FRGRGILVGMKKTLVFYLGRAPRGEKTGWVMHEFRLE 148
                        **********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-6415171IPR003441NAC domain
PROSITE profilePS5100558.4521171IPR003441NAC domain
PfamPF023655.4E-2922147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0005634Cellular Componentnucleus
GO:0000975Molecular Functionregulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSEVSVMAEV EETAAAAPLD LPPGFRFHPT DEEIVSHYLT PKALNHRFSS GVIGDVDLNK  60
CEPWHLPAMA KMGEKEWYFF CHKDRKYPTG TRTNRATESG YWKATGKDKE IFRGRGILVG  120
MKKTLVFYLG RAPRGEKTGW VMHEFRLEGK LPSQLPRSAK DQWAVCKVFN KELALAAKNG  180
PMTVTGATAD DAGIERVGSF SFLSDFIEPA ELPPLMDPSF VADIDGVDDA KVSASTSGQA  240
AIAAGFHVAS QVMSYQQVKM EEPLPLPYLH QQPPRMLHSG QYFSLPAVHP GDLTPSAIRR  300
YCKAEQVSGQ TSALSASRDT GLSTDPNAAG CAEISSAPTS QPFPEFDDAI LGLDDFWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-54101729169NAC domain-containing protein 19
3swm_B2e-54101729169NAC domain-containing protein 19
3swm_C2e-54101729169NAC domain-containing protein 19
3swm_D2e-54101729169NAC domain-containing protein 19
3swp_A2e-54101729169NAC domain-containing protein 19
3swp_B2e-54101729169NAC domain-containing protein 19
3swp_C2e-54101729169NAC domain-containing protein 19
3swp_D2e-54101729169NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00332DAPTransfer from AT3G04060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0152400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0659890.0AK065989.1 Oryza sativa Japonica Group cDNA clone:J013046E14, full insert sequence.
GenBankJN1854450.0JN185445.1 Oryza sativa Japonica Group NAC transcription factor 39 (NAC39) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633121.10.0NAC domain-containing protein 92
TrEMBLA0A0D3FI010.0A0A0D3FI01_9ORYZ; Uncharacterized protein
TrEMBLI1PAX80.0I1PAX8_ORYGL; Uncharacterized protein
STRINGORGLA03G0152400.10.0(Oryza glaberrima)
STRINGOBART03G15920.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.11e-91NAC domain containing protein 46