PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0150600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family EIL
Protein Properties Length: 641aa    MW: 70907.6 Da    PI: 4.7882
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0150600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3510.11.1e-155794651354
                        XXXXXXXXXXXXXXXXXXXXXXX..XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
               EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaa..tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasds 90 
                        eel++rmw+d+m+lkrlke ++++ +d       + +k ++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+
  ORGLA03G0150600.1  79 EELERRMWRDRMKLKRLKELQLSRGKDPAGGvvGDPSKPRQSQEQARRKKMSRAQDGILKYMLKMMEVCRAQGFVYGIIPEKGKPVSGASDN 170
                        8*********************9885555448788999****************************************************** PP

                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHH CS
               EIN3  91 LraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwg 182
                        Lr+WWkekv+fdrngpaai+kyqa+n++++ es+l + ++ ++hsl+elqDTtlgSLLsalmqhcdppqrr+plekgv+pPWWPtG+e+ww+
  ORGLA03G0150600.1 171 LRGWWKEKVRFDRNGPAAIAKYQADNAVPGCESELAS-GTGSPHSLQELQDTTLGSLLSALMQHCDPPQRRYPLEKGVPPPWWPTGDEEWWP 261
                        ***********************************66.****************************************************** PP

                        HHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX.....XXXX CS
               EIN3 183 elglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss.....slrk 269
                        elg++kdqg+ppykkphdlkkawkvsvLtavikhmsp+ie+ir+l+rqsk+lqdkm+ake  ++l+v++qee+++ ++ +  +        +
  ORGLA03G0150600.1 262 ELGIPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIEKIRRLVRQSKCLQDKMTAKEISTWLAVVKQEEELYLKLNPGARppaptGGIT 353
                        ********************************************************************************944345442233 PP

                        XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX.............................XXXXXXXXXXXXXXXXXXXXX......XXX CS
               EIN3 270 qspkvtlsceqkedvegkkeskikhvqavktta.............................gfpvvrkrkkkpsesakvsskevsrtcqss 332
                        ++ ++++s++ ++dv++ ++ k  ++ ++k+                               ++++++kr +  +e++ + +++v +tc++ 
  ORGLA03G0150600.1 354 SAISFNASSS-EYDVDVVDDCKGDEAGNQKAVVvadptafnlgaamlndkflmpasmkeeatDVEFIQKRSASGAEPELMLNNRV-YTCNNV 443
                        5566666655.99***77777777777777766888888*****************************************99976.****** PP

                        XXXX.XXXXXXXXXXXXXXXXX CS
               EIN3 333 qfrgsetelifadknsisqney 354
                        q+++s++  +f d+n++++++y
  ORGLA03G0150600.1 444 QCPHSDYGYGFLDRNARNSHQY 465
                        ********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.3E-13179333No hitNo description
Gene3DG3DSA:1.10.3180.102.0E-74208341IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.09E-61212336IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MMGGGLVMDQ GMMFPGVHNF VDLLQQNGGD KNLGFGALVP QTSSGEQCVM GEGDLVDPPP  60
ESFPDAGEDD SDDDVEDIEE LERRMWRDRM KLKRLKELQL SRGKDPAGGV VGDPSKPRQS  120
QEQARRKKMS RAQDGILKYM LKMMEVCRAQ GFVYGIIPEK GKPVSGASDN LRGWWKEKVR  180
FDRNGPAAIA KYQADNAVPG CESELASGTG SPHSLQELQD TTLGSLLSAL MQHCDPPQRR  240
YPLEKGVPPP WWPTGDEEWW PELGIPKDQG PPPYKKPHDL KKAWKVSVLT AVIKHMSPDI  300
EKIRRLVRQS KCLQDKMTAK EISTWLAVVK QEEELYLKLN PGARPPAPTG GITSAISFNA  360
SSSEYDVDVV DDCKGDEAGN QKAVVVADPT AFNLGAAMLN DKFLMPASMK EEATDVEFIQ  420
KRSASGAEPE LMLNNRVYTC NNVQCPHSDY GYGFLDRNAR NSHQYTCKYN DPLQQSTENK  480
PSPPAIFPAT YNTPNQALNN LDFGLPMDGQ RSITELMNMY DNNFVANKNL SNDNATIMER  540
PNAVNPRIQI EEGFFGQGSG ISGSNGGVFE DVNGMMQQPQ QTTPAQQQFF IRDDTPFGNQ  600
MGDINGASEF RFGSGFNMSG AVEYPGAMQG QQKNDGSNWY Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A6e-742103411132Protein ETHYLENE INSENSITIVE 3
4zds_B6e-742103411132Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator in the ethylene response pathway (PubMed:16786297, PubMed:28829777, PubMed:27701783, PubMed:25995326). Required for the inhibition of root growth by ethylene in etiolated seedlings (PubMed:25995326, PubMed:28829777). Functions upstream of the auxin biosynthetic gene YUCCA8 and directly activates its expression (PubMed:28829777). Functions downstream of the ethylene signaling factor EIN2 in disease resistance against the rice blast fungus (Magnaporthe oryzae) (PubMed:27701783). Binds directly to the promoters of the NADPH oxidases RBOHA and RBOHB, and the jasmonate biosynthetic gene OPR4 to activate their expression during fungal infection (PubMed:27701783). May enhance disease resistance by facilitating reactive oxygen species (ROS) generation and jasmonate biosynthesis with subsequent phytoalexin accumulation during Magnaporthe oryzae infection (PubMed:27701783). Acts as negative regulator of salt tolerance (PubMed:25995326). During salt stress, activates the cation transporter HKT1, which mediates increased sodium uptake in roots, and contributes to sodium accumulation and salt toxicity (PubMed:25995326). Binds directly to the DNA sequence 5'-TGTTACAAATACC-3' in the promoter of the GA20OX2 gene to activate its expression at the transcriptional level during ethylene signaling (PubMed:30002253). Possesses transactivation activity in protoplasts (PubMed:25995326). {ECO:0000269|PubMed:16786297, ECO:0000269|PubMed:25995326, ECO:0000269|PubMed:27701783, ECO:0000269|PubMed:28829777, ECO:0000269|PubMed:30002253}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00367DAPTransfer from AT3G20770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0150600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:27701783}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186740.0AC118674.3 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0093J20, from chromosome 3, complete sequence.
GenBankAC1370700.0AC137070.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0035J18, from chromsome 3, complete sequence.
GenBankAK1032270.0AK103227.1 Oryza sativa Japonica Group cDNA clone:J033123C05, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629858.10.0ETHYLENE INSENSITIVE 3-like 1 protein
SwissprotQ10M410.0EIL1A_ORYSJ; Protein ETHYLENE-INSENSITIVE 3-like 1a
TrEMBLI1PAW00.0I1PAW0_ORYGL; Uncharacterized protein
STRINGORGLA03G0150600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20770.11e-165EIL family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C, et al.
    MAOHUZI6/ETHYLENE INSENSITIVE3-LIKE1 and ETHYLENE INSENSITIVE3-LIKE2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.
    Plant Physiol., 2015. 169(1): p. 148-65
    [PMID:25995326]
  3. Yang C, et al.
    Activation of ethylene signaling pathways enhances disease resistance by regulating ROS and phytoalexin production in rice.
    Plant J., 2017. 89(2): p. 338-353
    [PMID:27701783]
  4. Qin H, et al.
    The activation of OsEIL1 on YUC8 transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development.
    PLoS Genet., 2017. 13(8): p. e1006955
    [PMID:28829777]
  5. Kuroha T, et al.
    Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding.
    Science, 2018. 361(6398): p. 181-186
    [PMID:30002253]