PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0078800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 267aa    MW: 30475.2 Da    PI: 8.0056
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0078800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.8e-19231091199
                        HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        +++  l lp kfa+e g  + ++  l++  e  r W+vk+  +  sg ++l++GW+eF++a++L++g f+vF++dg   f  +v+vf++
  ORGLA03G0078800.1  23 SSKTKLKLPYKFARELGDRELREARLRVAGEGRRPWDVKVFDDDVSGDVYLGRGWQEFARAHDLRDGHFLVFRYDGAAAF--TVTVFDE 109
                        455669**********999999999***************77999999**************************998888..9999986 PP
2B347.92.3e-151682401487
                        T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        + l +p +f e+h++  +e  +++l   +g+ W+v+l++  r +++r+ ++ GW +F+ +ngL +gD++ F++ ++
  ORGLA03G0078800.1 168 QYLNVPMEFQEAHEYARRE--KVVL-RMRGEAWTVRLKHsrRERGQRTAFRYGWHRFCVDNGLAVGDTCFFRVLRE 240
                        56889********988554..4555.5599*******9876667777*************************6654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.41E-1913116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.15613110IPR003340B3 DNA binding domain
CDDcd100171.23E-1913108No hitNo description
Gene3DG3DSA:2.40.330.107.6E-2114112IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.8E-1615110IPR003340B3 DNA binding domain
PfamPF023625.3E-1623109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-24151262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-16152243IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.1E-5153262IPR003340B3 DNA binding domain
PROSITE profilePS5086312.351155262IPR003340B3 DNA binding domain
PfamPF023623.2E-13169240IPR003340B3 DNA binding domain
CDDcd100172.73E-10170236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEDQMANLRL TDFEFFRIIL PGSSKTKLKL PYKFARELGD RELREARLRV AGEGRRPWDV  60
KVFDDDVSGD VYLGRGWQEF ARAHDLRDGH FLVFRYDGAA AFTVTVFDET MCRRDYRRHH  120
DAAESGSSSS SDSSDAAAAA AAEGVGDVAL SQFAVTLRQC NLEDKQAQYL NVPMEFQEAH  180
EYARREKVVL RMRGEAWTVR LKHSRRERGQ RTAFRYGWHR FCVDNGLAVG DTCFFRVLRE  240
GDLRRGGAAD DHVLKVAVRK ADGTTLE
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0078800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708610.0AK070861.1 Oryza sativa Japonica Group cDNA clone:J023073O05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628624.11e-174B3 domain-containing protein Os03g0212300
SwissprotQ10Q261e-175Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLI1P8U20.0I1P8U2_ORYGL; Uncharacterized protein
STRINGORGLA03G0078800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.15e-21B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]