PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0035600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 662aa    MW: 70393.6 Da    PI: 5.2469
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0035600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.8e-05551576123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        ++C+  +C ++F+++ +L +H ++ +
  ORGLA03G0035600.1 551 FQCEidYCRMTFKNRAELSVHKKNtC 576
                        89*******************99866 PP
2zf-C2H212.40.00049576598323
                        ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                        C+   Cg++F+++ +L+rH++ H
  ORGLA03G0035600.1 576 CTvkSCGRHFRSHKYLRRHQSIH 598
                        88889***************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035516551573IPR015880Zinc finger, C2H2-like
SMARTSM003550.42574598IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.009574603IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-4575598IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280576598IPR007087Zinc finger, C2H2
SuperFamilySSF576673.99E-9590632No hitNo description
Gene3DG3DSA:3.30.160.606.3E-10599625IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.887604633IPR007087Zinc finger, C2H2
SMARTSM003550.04604628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280606628IPR007087Zinc finger, C2H2
SuperFamilySSF576677.16E-7623657No hitNo description
Gene3DG3DSA:3.30.160.602.6E-7626656IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035539634656IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MRIRRYAARL LASSTATAPS SLPPPPAASA AWCHAAADDC AICDLTRSAS PQVVAPDAIK  60
QKGHIAGRAP EPELRSDPRV GLAERTPVPE DQGRDIDDGP PAKRSLTFTD AAARLEGSGN  120
VGAGVATEPA DVGAGVATEP AARVGAPVAN GAVSGQEDRA ATCLADESAA ELIATGVTSL  180
VTGATAEPEV LKGASFANTN VTEPRVSERV LLVREAATEP EAEVSMREVT GGALPDGEGA  240
AKLEITGGLS RESADKMEVT KGISLVTEAS ADSELAQRVP TEPGVELSLP EVTERVPVVT  300
EDFTELGDTF SGLHITGFAS LDNEGSVEQE VTGSGSLVNE ATEMEVKEGT CIFTRVATEL  360
GDTGRVSACS GDGDIALDEP RPPDCVSEVA NVNVGNAGEA VASKVQPFRD NAESVGGSIN  420
STGNGHVSSK SPTADEAAPP GGCTDTPSVS CLSDIVARSI GKSGRTDIIC YVRRRGKRKL  480
EMVEVKEENV EMDDSAICDQ YDDKVASERT GPCESVTSTA VSVEIKIADI KRELEDNSTA  540
SKGKKKRAKR FQCEIDYCRM TFKNRAELSV HKKNTCTVKS CGRHFRSHKY LRRHQSIHND  600
DMPYKCPWEG CSMAFKWSWD RGEHFQVHAG KRPYKCTTPG CSKIYKFVSD FTRHKRRCKP  660
QR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A3e-4355165723129Lysine-specific demethylase REF6
6a58_A3e-4355165723129Lysine-specific demethylase REF6
6a59_A3e-4355165723129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1472478RRRGKRK
2472479RRRGKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0035600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1057340.0AC105734.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0050N02, complete sequence.
GenBankAK0688030.0AK068803.1 Oryza sativa Japonica Group cDNA clone:J013161F12, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632116.10.0uncharacterized protein LOC4331626
TrEMBLA0A0D3FDU70.0A0A0D3FDU7_9ORYZ; Uncharacterized protein
TrEMBLI1P7L00.0I1P7L0_ORYGL; Uncharacterized protein
STRINGORGLA03G0035600.10.0(Oryza glaberrima)
STRINGOBART03G03800.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.15e-41relative of early flowering 6