PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0015000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 291aa    MW: 30732.1 Da    PI: 9.9644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0015000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14115166155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+++  A++Y+k+L+
  ORGLA03G0015000.1 115 QRMTHIAVERNRRRLMNDHLASLRSLIPSN---YIPRGDQATVVGGAIDYVKQLE 166
                        79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-15106173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-14113169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.92E-12113166No hitNo description
PROSITE profilePS5088815.142114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-11115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-10120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEQWAAAAAA DQAAASAGAG QMPFLALLQG AMEADGGGGG DGRKRHAAAA AFASCCPCPP  60
VADLDLLESC VTQAAAPPVT APATRAERRR KRPRPRPRAA PPPEKRKKPE EAENQRMTHI  120
AVERNRRRLM NDHLASLRSL IPSNYIPRGD QATVVGGAID YVKQLEQQLV ALQAAAAERS  180
GVGVVATAAT AASDGVFVSP QYTSYSEARG GSGVDVEATA AVGGHVRVRV AGRRWTGRLV  240
RAVAAMEDLR LTVLHLAVTS VGHDAVVYCF NLKVKTTTTL HHLLLHVPSF F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18797RRRKRPRPRPR
28995RKRPRPR
389107RKRPRPRPRAAPPPEKRKK
49094KRPRP
5115126RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0015000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2104910.0AC210491.1 Oryza glaberrima clone OG_BBa0088K23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629439.20.0transcription factor bHLH57
TrEMBLI1P7040.0I1P704_ORYGL; Uncharacterized protein
STRINGORGLA03G0015000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-29bHLH family protein