PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0353300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 72aa    MW: 7973.3 Da    PI: 10.1352
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0353300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.61e-151153244
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                       rie+  +r + f kR++g+ KKAeEL vLCda v  +++s +g
  ORGLA02G0353300.1 11 RIEDRVRRGICFRKRLAGLEKKAEELAVLCDAHVGFVVLSCSG 53
                       8**************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-12264IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.614253IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-16354IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-12424IPR002100Transcription factor, MADS-box
PfamPF003193.2E-181153IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-122439IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-123960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MGRRGRVVLR RIEDRVRRGI CFRKRLAGLE KKAEELAVLC DAHVGFVVLS CSGDDANPHH  60
FAAPATYAPI LS
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0353300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8550971e-115CR855097.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0075F02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637115.12e-32truncated transcription factor CAULIFLOWER D-like isoform X1
RefseqXP_025880634.11e-32MADS-box transcription factor 33-like isoform X3
RefseqXP_025880635.11e-32MADS-box transcription factor 33-like isoform X4
TrEMBLI1P6C72e-44I1P6C7_ORYGL; Uncharacterized protein
STRINGORGLA02G0353300.13e-45(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154931117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.19e-15AGAMOUS-like 21