PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0264100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 186aa    MW: 19748.1 Da    PI: 8.3951
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0264100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB136.11e-4229122396
              NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                        +++++lP+an++r+mkkvlP++aki+ +ak+++++c++ef++fv++eas+k+++e+r+t++++d+l ++++lGf++yv+p+++y++ yre+e
  ORGLA02G0264100.1  29 ATNAELPMANLVRLMKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDYLGSFGDLGFDRYVDPMDAYIHGYREFE 120
                        68999**************************************************************************************9 PP

              NF-YB  95 ge 96 
                        ++
  ORGLA02G0264100.1 121 RA 122
                        86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.2E-2529122IPR009072Histone-fold
PfamPF008081.3E-133292IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.19E-2333152IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MAGNRKRGGR NMDQVEKAAV RSDGVGGSAT NAELPMANLV RLMKKVLPGK AKIGGAAKGL  60
THDCAVEFVG FVGDEASEKA KAEHRRTVAP EDYLGSFGDL GFDRYVDPMD AYIHGYREFE  120
RAGGNRRVAP PPPAAATPLT PGGPTFTDAE LQFLRSVIPS RSDDEYSGSS PAIGGYGYGY  180
GYGKNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A2e-24341181397NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May act through association with MADS-box proteins. May regulate the expression of genes involved in flowering. {ECO:0000269|PubMed:11971906}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0264100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3002180.0AJ300218.1 Oryza sativa nf-yb1 gene and nf-YB1 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624776.11e-132nuclear transcription factor Y subunit B-1
SwissprotQ6Z3481e-133NFYB1_ORYSJ; Nuclear transcription factor Y subunit B-1
TrEMBLA0A0D3F9X91e-132A0A0D3F9X9_9ORYZ; Uncharacterized protein
TrEMBLI1P3T51e-132I1P3T5_ORYGL; Uncharacterized protein
STRINGORGLA02G0264100.11e-132(Oryza glaberrima)
STRINGOBART02G30870.11e-132(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136592631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.17e-22nuclear factor Y, subunit B4