PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0236600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 253aa    MW: 28609 Da    PI: 10.7736
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0236600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.25.9e-312072254
            G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54
                       prlrWt eLH++Fv+a++ LGG++kAtPk il+lm+v gLt++hvkSHLQ+YR
  ORGLA02G0236600.1 20 PRLRWTAELHRSFVRAIDCLGGQQKATPKLILQLMDVRGLTISHVKSHLQMYR 72
                       8**************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-291673IPR009057Homeodomain-like
PROSITE profilePS5129411.0771676IPR017930Myb domain
SuperFamilySSF466892.15E-151872IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-222072IPR006447Myb domain, plants
PfamPF002491.9E-62172IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGISGERKGA ARQYNRSKVP RLRWTAELHR SFVRAIDCLG GQQKATPKLI LQLMDVRGLT  60
ISHVKSHLQM YRGTRHGIGQ NDMQPQLHLK QHSFGSDEQS PKEFMCPPIK RAKVGTEASG  120
KYRCMEGSSD MRSSAPPAGT RYFIDDCMRL QEVSMDRRRS DQHDAAAAAR ARAPAAAASS  180
LHQALGFWVQ GRREEPFMVH QISKPKAHQL NHMVRNMKIS CKENHESRFF MSLVMMLLLI  240
SADLVSRETP SKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-172176358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-172176358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-172176358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-172176358Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0236600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041601e-151AP004160.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1197_E09.
GenBankAP0041881e-151AP004188.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1493_H11.
GenBankAP0149581e-151AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-151CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624520.11e-174uncharacterized protein LOC107276067
TrEMBLI1P3100.0I1P310_ORYGL; Uncharacterized protein
STRINGORGLA02G0236600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29663583
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.17e-32G2-like family protein