PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA02G0219000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 231aa MW: 24334.2 Da PI: 4.1766 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.2 | 5.1e-10 | 1 | 24 | 24 | 48 |
HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48 W++Iar+++ gRt++++k++w++yl ORGLA02G0219000.1 1 WSRIARHLP-GRTDNEVKNYWNSYL 24 *********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 1.05E-7 | 1 | 24 | No hit | No description |
Pfam | PF00249 | 1.9E-7 | 1 | 24 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.58E-8 | 1 | 31 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-11 | 1 | 25 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.003 | 1 | 28 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
WSRIARHLPG RTDNEVKNYW NSYLKKRVES GGGKTSQGPP TTPASAASSP ADSDDSHSLQ 60 QKPHEPANSD SSEPAHESSS ASADSSCLTV TTDHPPVSRP HAAVTPKVMF ADWLDMEYIC 120 GQVAAAPGLD TAGFAVIGGA AGDQQQQQQQ QVMSQDGSVH QADGPSCGVD DSSLQQQQQE 180 GFGGNGGCWD FQEQFDSIDQ MQASGGGGGG GFCDLLSMSD FDLWAELERT A |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA02G0219000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. | |||
GenBank | CT837840 | 0.0 | CT837840.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA108D17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622999.1 | 1e-122 | transcription factor MYB21 | ||||
TrEMBL | I1P2I4 | 1e-168 | I1P2I4_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA02G0219000.1 | 1e-169 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 3e-11 | myb domain protein 19 |