PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0195900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1053aa    MW: 119146 Da    PI: 9.552
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0195900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.21.8e-1098810473395
                         -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                 B3   33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95  
                            ++l+d+  r W v +    k+  + +t+GWk F+ an+L++gD++ F  +  +e el ++
  ORGLA02G0195900.1  988 RNVVILKDPMRRLWPVFY--HDKPVFVGFTAGWKPFAAANNLQAGDVCKFVKEM-DEDELAFQ 1047
                         34799*************..9***9*************************9443.44444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.489380473IPR003340B3 DNA binding domain
SuperFamilySSF1019361.94E-16382475IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.0E-4383473IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-14383473IPR015300DNA-binding pseudobarrel domain
CDDcd100172.96E-7395470No hitNo description
SMARTSM010190.00469601052IPR003340B3 DNA binding domain
SuperFamilySSF1019361.59E-139611052IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-139611052IPR015300DNA-binding pseudobarrel domain
CDDcd100171.93E-149661052No hitNo description
PfamPF023629.5E-89701049IPR003340B3 DNA binding domain
PROSITE profilePS5086310.2789911053IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1053 aa     Download sequence    Send to blast
MDDAVRGQGC VGRLRSFNKT KKKNRNCSDD MRNGDDEEKK KYSHHDMKKN LRNDANEEKR  60
KSSDDMRDGD FEEKKKCSRH DMKKNLRNDA NGERRKSSDD MRDGDDEEKK CSRQDMKKNL  120
RNDADEEKRK SSDDMRDGDD EEKKKRSRHD MKKNSRNDAD EEKRKRKRKR KRKCSDDLKK  180
SVLNDASKEA TSHSDWRKNR KAGSDAEQRG KKLLNGDKKA KSRKVTTPFF EKMRKIKMQR  240
TSNQNGEKNM KSDGDSYKKT VPLSVNKGKM EKDGTNKRTL SNTLVAKERK MRPSDSMEMK  300
MKKKKRDASF VQPDERTAQT FSTKNKEKKR KAPSTPLKRE QKERVASSDN KKETKKACIV  360
AIGNEKKNCR DGKKKKRKAA FAFFKFVRDE FEELLFIPPA VAPSLKDLID RHVYLEDSEG  420
KCSKIRLSVV DGSLAFYEGW NSFVSEHCIK WGEFLLFEYT PESTFSVRVF GIDSCERLHF  480
SVKSGGKGAV KKRKERHTLS DDLISHYNGQ YQDSEDIHDD PNVSGESPRS KEPKIAVDAE  540
IGTRNLVAKS INAASETQDS ERVESGIGYG SLGALGNKVR NLSNGECDTR SDSVFCIQEK  600
TRRSEVIIIS DEAYSTQVDE DTMKQTAPSE ASEIHHVTIN TQKDLERVVD GVCCESSVAL  660
NNKMGNLILG EPKNKNISPA CSTEKTNGSE ITPTTGAIPL TQENIDTVKL NTLSCFEEDR  720
STTRESELAA AIPTISETHD SDKDLGQKHQ RNSVQVNSII AVDKYLNDSE MNISGNIFRI  780
YEAPAGTRCL EKWKRGIVNG RAALDDIGQV RPEKTQKAGE KLVGNCGAMG ESPVDLRIES  840
DVTDTCLKPI LNIPIEELSI LDSVSISKCG RSRTEVNHLF NQKGATVQLQ TKKEPLKPTG  900
SSGNRKGDKI AVSVNRVFAH QSELQIPQQE NGNFTSCVTP VALLPAKAEL LDLDDHSLQF  960
CIPSTIQKWL ELPKSLPITC RQKGRYDRNV VILKDPMRRL WPVFYHDKPV FVGFTAGWKP  1020
FAAANNLQAG DVCKFVKEMD EDELAFQVYI TRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143165KKRSRHDMKKNSRNDADEEKRKR
2164172KRKRKRKRK
3166172KRKRKRK
4167172RKRKRK
5372377KKKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0195900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1219900.0AK121990.1 Oryza sativa Japonica Group cDNA clone:J033109I02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624189.10.0B3 domain-containing protein Os02g0598200
RefseqXP_015624190.10.0B3 domain-containing protein Os02g0598200
SwissprotQ6K5K20.0Y2982_ORYSJ; B3 domain-containing protein Os02g0598200
TrEMBLI1P1V30.0I1P1V3_ORYGL; Uncharacterized protein
STRINGORGLA02G0195900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122722730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-11B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]