PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0180100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 418aa    MW: 44228.5 Da    PI: 6.5234
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0180100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.35.5e-1564145286
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        W++  + +Li+a  e+  +l+rg+l+ p+W+ev++++ ++ g++++pk   qCk++++ l+k+yk +k+   +       ++pyf++l+
  ORGLA02G0180100.1  64 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKQPKsdvQCKNRIDTLKKKYKVEKAKPDS-------SWPYFHRLD 145
                        *************************************87889988664334**************99998886.......5******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-2362146No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MDDDGGASPS SSLSPSRSPS PLPVADPVTV AAAPPGHLAL AIPIPKPGSS SGGGGGGGGR  60
EDAWSDGATS TLIDAWGERF VALGRGSLRH PQWQEVAEVV SSRDGYSKQP KSDVQCKNRI  120
DTLKKKYKVE KAKPDSSWPY FHRLDTLLAP VHKPAGASPA AAAGAAGAGN SGSNSAAAAT  180
AARSTAPMAP RVNFPQRTRT QFLPSSGVKR RMPSPPQVSA SSESSDGFPP EPSMAAANGK  240
RRREVEEEVN GADSGHRTQG LCELAQAIRR FGEVYERVEL AKREQELRME RDRLEAAREL  300
EDQRVQFFLK MQMELSKANN AGASAAAAAV GAVATAIAAA DGNGTRRTAM ATDVGTSSNH  360
HVRYRFKDSR HCHAAPQQPQ HQYNENNAAE AARGTGNGSD TDNKEDEDEA EDEEDESQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0180100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623080.10.0trihelix transcription factor ASIL1
TrEMBLI1P1E50.0I1P1E5_ORYGL; Uncharacterized protein
STRINGORGLA02G0180100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.16e-31sequence-specific DNA binding transcription factors