PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA02G0031900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 1141aa MW: 126678 Da PI: 6.5122 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 65.8 | 6.4e-21 | 148 | 249 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+ ORGLA02G0031900.1 148 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDIHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIVV-- 235 99*****************************954.4444.49**********************************************99.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++ +l+++++r+ ORGLA02G0031900.1 236 RDEKHQLLLGIRRA 249 55788889999997 PP | |||||||
2 | Auxin_resp | 117.6 | 1.1e-38 | 274 | 357 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFv++++k++kal+ +++s+GmRf+m+fete+ +rr++Gt++g+sdldpvrW+nS+Wr+L+ ORGLA02G0031900.1 274 AAHAAANSSPFTIFYNPRASPTEFVIPFAKYQKALYsNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 357 79*********************************989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 32 | No hit | No description |
SuperFamily | SSF101936 | 1.31E-41 | 137 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-39 | 140 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.20E-18 | 147 | 248 | No hit | No description |
SMART | SM01019 | 6.7E-21 | 148 | 250 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.912 | 148 | 250 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-18 | 148 | 249 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-33 | 274 | 357 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.8E-9 | 1005 | 1093 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 29.258 | 1008 | 1092 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.83E-7 | 1026 | 1087 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1141 aa Download sequence Send to blast |
MASMKQQQTP ASSAVTAAAA ASSSATAAVA ACEGERKAAA INSELWHACA GPLVSLPPVG 60 SLVVYFPQGH SEQVAASMQK DVDAHVPSYP NLPSKLICLL HGVNLHADPD TDEVYAQMTL 120 QPVNTYGKEA LQLSELALKQ ARPQMEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDFS 180 MQPPAQELQA RDIHDNVWTF RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVIVVRDEKH 240 QLLLGIRRAN RQPTNISSSV LSSDSMHIGV LAAAAHAAAN SSPFTIFYNP RASPTEFVIP 300 FAKYQKALYS NQISLGMRFR MMFETEELGT RRYMGTITGI SDLDPVRWKN SQWRNLQVGW 360 DESAAGERRN RVSIWEIEPV AAPFFLCPQP FFGVKRPRQL DDESDMENLF KRAMPWLGEE 420 VCIKDTQNQN STAPGLSLVQ WMNMNRQQSS SLANTAAQSE YLQALGNPAM QNLAADELAR 480 QLYVQNNLLQ QNCIQFNSPK LPQQMQTMND LSKAAIPLNQ LGAIINPQDQ KQDAVNHQRQ 540 QNSIQVIPLS QAQSNLVQAQ VIVQNQMQQQ KPSPTQNPQR INGQRLLLSH QQQDQNLQLQ 600 QQLLLQQKQQ LQQQQQQQQN QQQLNKSLGQ LVNLASQQSK LFDEELQLQI LQKLQQQSLM 660 SQSTSTLSQP PLIQEQQKLI TDMQKQLSNS HSLAQQQMMP QQEIKPSLQA TPLLPTVQQE 720 QQQKLLQKQV SLADVSGVAF QPISSTNVIP KTGGAMIISG ATQSVVTEEM PSCSTSPSTA 780 NGNHFTQSTK NRHCINTERL PPSTAPMLIP TSIDAVTATP LMTKELPKPN NNVKQSVVNS 840 KLPNVAPGPQ NCINNALQTD NLETSSSATS LCPSRTDGLV HQGFPSSNFN QHQMFKDALP 900 DVEMEGVDPS NSGLFGINND NLLGFPIETE DLLINALDSV KYQNHISTDV ENNYPMQKDA 960 LQEISTSMVS QSFGQSDMAF NSIDSAINDG AFLNKNSWPA APPLQRMRTF TKVYKRGAVG 1020 RSIDIGRYSG YEELKHALAR MFGIEGQLED RQRIGWKLVY KDHEDDILLL GDDPWEEFVN 1080 CVRCIRILSP QEVQQMSLDG DLGSNVLPNQ ACSSSDGVNG WRPRCDQNPR NPSIGPYDQF 1140 E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-166 | 34 | 378 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA02G0031900.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005294 | 0.0 | AP005294.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1679_B08. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627049.1 | 0.0 | auxin response factor 5 isoform X1 | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | I1NX63 | 0.0 | I1NX63_ORYGL; Auxin response factor | ||||
STRING | ORGLA02G0031900.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1409 | 35 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |