PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0390500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 219aa    MW: 23817.6 Da    PI: 6.1627
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0390500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.91.7e-154597156
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                       + y+GVr +    rWv+e+r+p     +  +r++lg++ t+e+Aa+a++ a+ +l+ge
  ORGLA01G0390500.1 45 PVYRGVRARAGGSRWVCEVREP-----QaqARIWLGTYPTPEMAARAHDVAAIALRGE 97
                       68********9999****9999.....446**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-124597IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2546107IPR001471AP2/ERF domain
SMARTSM003801.8E-2446111IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1646107IPR016177DNA-binding domain
PROSITE profilePS5103221.1846105IPR001471AP2/ERF domain
CDDcd000186.43E-2147107No hitNo description
PRINTSPR003675.9E-64758IPR001471AP2/ERF domain
PRINTSPR003675.9E-67086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDTEDTSSAS SSSVSPPSSP GGGHHHRLPP KRRAGRKKFR ETRHPVYRGV RARAGGSRWV  60
CEVREPQAQA RIWLGTYPTP EMAARAHDVA AIALRGERGA ELNFPDSPST LPRARTASPE  120
DIRLAAAQAA ELYRRPPPPL ALPEDPQEGT SGGGATATSG RPAAVFVDED AIFDMPGLID  180
DMARGMMLTP PAIGRSLDDW AAIDDDDDHY HMDYKLWMD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0390500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLK9314540.0LK931454.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv330639.
GenBankLK9314550.0LK931455.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv330642.
GenBankLK9314560.0LK931456.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv336680.
GenBankLK9314570.0LK931457.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv336683.
GenBankLK9314580.0LK931458.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv336689.
GenBankLK9314590.0LK931459.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv336693.
GenBankLK9314640.0LK931464.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv336676.
GenBankLK9314650.0LK931465.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv336684.
GenBankLK9314660.0LK931466.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv336715.
GenBankLK9314670.0LK931467.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv330629.
GenBankLK9314700.0LK931470.1 Oryza rufipogon OsDREB1F gene for transcription factor, allele O.ruf336708.
GenBankLK9314710.0LK931471.1 Oryza rufipogon OsDREB1F gene for transcription factor, allele O.ruf336721.
GenBankLK9314720.0LK931472.1 Oryza rufipogon OsDREB1F gene for transcription factor, allele O.ruf336728.
GenBankLK9314730.0LK931473.1 Oryza rufipogon OsDREB1F gene for transcription factor, allele O.ruf336727.
GenBankLK9314750.0LK931475.1 Oryza rufipogon OsDREB1F gene for transcription factor, allele O.ruf336687.
GenBankLK9314760.0LK931476.1 Oryza rufipogon OsDREB1F gene for transcription factor, allele O.ruf336723.
GenBankLK9314770.0LK931477.1 Oryza sativa Indica Group OsDREB1F gene for transcription factor, allele N22.
GenBankLK9314780.0LK931478.1 Oryza sativa Indica Group OsDREB1F gene for transcription factor, allele IR64.
GenBankLK9314790.0LK931479.1 Oryza sativa Indica Group OsDREB1F gene for transcription factor, allele APO.
GenBankLK9314800.0LK931480.1 Oryza sativa Indica Group OsDREB1F gene for transcription factor, allele SWARNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645845.11e-157dehydration-responsive element-binding protein 1F
SwissprotA2WZI41e-158DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z51e-158DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A0E0FZG11e-155A0A0E0FZG1_ORYNI; Transcription factor
TrEMBLA0A0E0N8441e-155A0A0E0N844_ORYRU; Transcription factor
TrEMBLA0A0H5BVM51e-155A0A0H5BVM5_ORYSI; Transcription factor
TrEMBLI1NVL51e-155I1NVL5_ORYGL; Uncharacterized protein
STRINGORUFI01G48730.11e-156(Oryza rufipogon)
STRINGOS01T0968800-001e-156(Oryza sativa)
STRINGONIVA01G51530.11e-156(Oryza nivara)
STRINGORGLA01G0390500.11e-156(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-45C-repeat-binding factor 4
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]