PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0358100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 435aa    MW: 47527.8 Da    PI: 8.6646
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0358100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-1077102227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        +++ C +++rtG C++G +C+F+H++
  ORGLA01G0358100.1  77 GEPDCTYYLRTGLCRFGMSCRFNHPQ 102
                        6899********************97 PP
2zf-CCCH391.4e-12122147227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+++++tGtCk+G++CkF+H++
  ORGLA01G0358100.1 122 GQPECQYYLKTGTCKFGPTCKFHHPR 147
                        5799********************96 PP
3zf-CCCH37.25.1e-12169193327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C ++++tG+CkyG++CkF+H++
  ORGLA01G0358100.1 169 EKECAYYLKTGQCKYGNTCKFHHPE 193
                        679********************96 PP
4zf-CCCH39.31.1e-12330355227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+++++tG Ck+G+ CkF+H++
  ORGLA01G0358100.1 330 DQPECQYYMKTGDCKFGAVCKFHHPR 355
                        689*********************96 PP
5zf-CCCH41.81.8e-13375400126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +++elC+f++r+G+Ck+G++CkF H+
  ORGLA01G0358100.1 375 PGEELCKFYSRYGICKFGANCKFDHP 400
                        689**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.5E-575102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.35275103IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-877102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-580103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-481102IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5120147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.986120148IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-10122147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6123149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5126148IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5166193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868166194IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6167193IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9169193IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5172192IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-5328355IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023328356IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9330355IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5331355IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4334354IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7374401IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413374402IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6376401IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10376400IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5378399IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MDDAGRASAP AVVTVTASAA APTPPPPPPP PPPPSQLPAT DEPSHDPAAL YGEGMWQQMT  60
MSGSGTMQPG PYPERSGEPD CTYYLRTGLC RFGMSCRFNH PQDRNLAIAS ARMKGEYPER  120
MGQPECQYYL KTGTCKFGPT CKFHHPREKA GIAGRVQLNT LGYPLRPSEK ECAYYLKTGQ  180
CKYGNTCKFH HPELFNAMAS SRGSPIYPSV HSSATAGPPS YTGTMASWAF PRGSFIPSPR  240
WQNPSNYAPM IVPQGLVQVP SWNSYTGQMM PVSSSESRLQ SPGAQQTYGT SQQVDASAGN  300
QGMLSPYRSS SYPVPQYALQ RENVFPERPD QPECQYYMKT GDCKFGAVCK FHHPRVRSMP  360
TPDCVLSPVG LPLRPGEELC KFYSRYGICK FGANCKFDHP TMAPPMGVYA YGSASTNVPM  420
VRRLVQSPSA SAYTS
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0358100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0989480.0AK098948.1 Oryza sativa Japonica Group cDNA clone:J013050D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622340.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLI1NUP10.0I1NUP1_ORYGL; Uncharacterized protein
STRINGORGLA01G0358100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-148zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]