PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0355000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 477aa    MW: 50961.4 Da    PI: 4.2799
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0355000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF511.9e-161152344
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                       i n   r +t+ kR++g++KKA EL +LCd+ vav+ ++++g
  ORGLA01G0355000.1 11 IANPQTRATTYKKRKAGLIKKAGELATLCDIPVAVVCAGPDG 52
                       789999**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.437152IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-20160IPR002100Transcription factor, MADS-box
CDDcd002666.57E-28281No hitNo description
SuperFamilySSF554555.23E-21383IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MARRKISIAL IANPQTRATT YKKRKAGLIK KAGELATLCD IPVAVVCAGP DGGAPTVWVS  60
PEGGDAIERY RVLPAEKRAR HTHVAYLQEE LDKERAKLAR LRQKGRPGEL DPPDAVLDGM  120
SQDELQQLLA SIDATLLATA KRREALGLLP GADDDADGGG RRRDADGTNS VGVHGYQHQE  180
VHAPATCDPF HPYNAGVTLM QPGYNNAQYM GGHGAVDMSG YQLQMQMPGN GSNNHSRLAW  240
GGFQPCNATF VQPVYGNLQC WDNNVVDGNG EPCDAIVPSA GDPYMDIAGN DVYGNQMQPA  300
PATNGGWHDP GTWGYDGGEP CKAIVPSSGD PYMGIGVYGN QMQPAPAPAA NGCWHNPAGT  360
WGNDGEPCNA IVPSAGHPYI DIECDIDGNY IDTIVFDYQT TSTSDNFMDA PVQFIVTGSD  420
ESIVTNVAGC DETEFSIDDL LQCSDASQHS SGLEELHYLS DLADGFDFGC NFDVLLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKISIALIANPQTRATTYKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0355000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034330.0AP003433.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0004D12.
GenBankAP0034360.0AP003436.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0470A12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640115.20.0uncharacterized protein LOC4324340
TrEMBLA0A0D3EXS60.0A0A0D3EXS6_9ORYZ; Uncharacterized protein
TrEMBLI1NUL00.0I1NUL0_ORYGL; Uncharacterized protein
STRINGORGLA01G0355000.10.0(Oryza glaberrima)
STRINGOBART01G41560.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31630.18e-18AGAMOUS-like 86