PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0353400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 729aa MW: 76000.4 Da PI: 7.0184 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.5 | 1.2e-18 | 539 | 635 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 +kvl++sdv+++gr+vlpkk ae h ++k++ ++ + +ed ++++W++++++ ++ks++y+l+ ++ +Fv++n+L+egDf+v++ ++ ORGLA01G0353400.1 539 QKVLKQSDVGSLGRIVLPKKEAEVHlpELKTRDGVSIPMEDiGTSQVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNELQEGDFIVIY--SDi 627 79*************************999***********7777*******99777777777777.********************..666 PP SEE..EEE CS B3 88 sefelvvk 95 ++++++++ ORGLA01G0353400.1 628 KSGKYLIR 635 88877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-27 | 529 | 644 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 1.30E-31 | 536 | 637 | No hit | No description |
SuperFamily | SSF101936 | 9.68E-22 | 537 | 631 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.278 | 538 | 640 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-16 | 538 | 640 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-15 | 539 | 634 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 729 aa Download sequence Send to blast |
MDASAGSSAP HSHGNPGKQG GGGGGGGGGR GKAPAAEIRG EAARDDVFFA DDTFPLLPDF 60 PCLSSPSSST FSSSSSSNSS SAFTTAAGGG CGGEPSEPAS AADGFGELAD IDQLLDLASL 120 SVPWEAEQPL FPDDVGMMIE DAMSGQPHQA DDCTGDGDTK AVMEAAGGGD DAGDACMEGS 180 DAPDDLPAFF MEWLTSNREY ISADDLRSIR LRRSTIEAAA ARLGGGRQGT MQLLKLILTW 240 VQNHHLQKKR PRTAIDDGAA SSDPQLPSPG ANPGYEFPSG GQEMGSAAAT SWMPYQAFTP 300 PAAYGGDAMY PGAAGPFPFQ QSCSKSSVVV SSQPFSPPNA AAAGDMHASG GGNMAWPQQF 360 APFPVSSTSS YTMPSVVPPP FTAGFPGQYS GGHAMCSPRL AGVEPSSTKE ARKKRMARQR 420 RLSCLQQQRS QQLNLSQIHI SGHPQEPSPR AAHSAPVTPS SAGCRSWGIW PPAAQIIQNP 480 LSNKPNPPPA TSKQPKPSPE KPKPKPQAAA TAGAESLQRS TASEKRQAKT DKNLRFLLQK 540 VLKQSDVGSL GRIVLPKKEA EVHLPELKTR DGVSIPMEDI GTSQVWNMRY RFWPNNKSRM 600 YLLENTGDFV RSNELQEGDF IVIYSDIKSG KYLIRGVKVR RAAQEQGNSS GAVGKHKHGS 660 PEKPGVSSNT KAAGAEDGTG GDDSAEAAAA AAAGKADGGG CKGKSPHGVR RSRQEAAAAA 720 SMSQMAVSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 2e-38 | 534 | 646 | 1 | 110 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 2e-38 | 534 | 646 | 1 | 110 | B3 domain-containing transcription factor FUS3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may participate in abscisic acid-regulated gene expression during seed development. May be required for seed maturation and dormancy induction. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0353400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105441 | 0.0 | AK105441.1 Oryza sativa Japonica Group cDNA clone:001-125-A06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629311.1 | 0.0 | B3 domain-containing protein VP1 isoform X2 | ||||
Swissprot | P37398 | 0.0 | VIV_ORYSJ; B3 domain-containing protein VP1 | ||||
TrEMBL | I1NUJ4 | 0.0 | I1NUJ4_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0353400.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7529 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 3e-61 | B3 family protein |