PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0306500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 587aa    MW: 64119.2 Da    PI: 8.5325
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0306500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-1867113148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g WT+eEde l +av+ + g++Wk+Ia++++  Rt+ qc +rwqk+l
  ORGLA01G0306500.1  67 KGGWTPEEDETLRKAVEAYKGRNWKKIAECFP-YRTEVQCLHRWQKVL 113
                        688*****************************.************986 PP
2Myb_DNA-binding62.11.2e-19119165148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+WT+eEd++++d+vk++G+  W+ Ia+ ++ gR +kqc++rw+++l
  ORGLA01G0306500.1 119 KGPWTQEEDDQIIDLVKKYGPTKWSVIAKALP-GRIGKQCRERWHNHL 165
                        79******************************.*************97 PP
3Myb_DNA-binding60.34.1e-19171214146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +++WTteE++ l++a++ +G++ W+ Ia+ ++ gRt++++k++w++
  ORGLA01G0306500.1 171 KDAWTTEEEQALINAHRIYGNK-WAEIAKVLP-GRTDNSIKNHWNS 214
                        679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0962113IPR017930Myb domain
SMARTSM007179.8E-1766115IPR001005SANT/Myb domain
PfamPF002493.2E-1667113IPR001005SANT/Myb domain
SuperFamilySSF466893.8E-1668123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-2469129IPR009057Homeodomain-like
CDDcd001675.44E-1570113No hitNo description
PROSITE profilePS5129431.757114169IPR017930Myb domain
SuperFamilySSF466893.59E-32116212IPR009057Homeodomain-like
SMARTSM007176.4E-19118167IPR001005SANT/Myb domain
PfamPF002491.9E-18119165IPR001005SANT/Myb domain
CDDcd001671.67E-16121165No hitNo description
Gene3DG3DSA:1.10.10.607.0E-27130173IPR009057Homeodomain-like
PROSITE profilePS5129423.863170220IPR017930Myb domain
SMARTSM007175.3E-18170218IPR001005SANT/Myb domain
PfamPF002496.1E-17171214IPR001005SANT/Myb domain
CDDcd001671.96E-14173216No hitNo description
Gene3DG3DSA:1.10.10.601.2E-22174219IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MGAMAMVEQE GCVENRQPLA ASSSSVSDGS SYGGGGGGLA QMSPPVSSSA NSISGLRRTS  60
GPIRRAKGGW TPEEDETLRK AVEAYKGRNW KKIAECFPYR TEVQCLHRWQ KVLNPELIKG  120
PWTQEEDDQI IDLVKKYGPT KWSVIAKALP GRIGKQCRER WHNHLNPEIR KDAWTTEEEQ  180
ALINAHRIYG NKWAEIAKVL PGRTDNSIKN HWNSSLRKKQ DMYNTSNNMV VPKLLVHDKF  240
KDKPKLMAME GHLDLNKAPI INSKDQPGTA HRSNCSGFLS RSSLPTAQPL TSREASVVDG  300
SAVTLVAQAL ESDSVRGKGL EIDSVHEKGL EVNSAPDHTG NSWTIQLEAA PSKGEAELSL  360
KNEARSLGPL CYQIPNMEDV VPVSSSLFSD HLTGNHTSER CGDDILSPAG CTTPPPTKGK  420
LTSQLSVDSI LKSAANSFPG TPSILKRRKR DKSTPVSASE MKISGSNTDR FYTPMGMEPA  480
TATPESFKTT SFLSLGSLDG SVKSFDVSPQ YRARSKRMAL TKTVEKQLDF SSDGLDTCGS  540
EILNSSCNNS QSTLSITEAP KLKEKEHAVQ LENLTKNFAH TTNLDVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-72662195158MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-72662195158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446451RRKRDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0306500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9402120.0FJ940212.1 Oryza sativa Japonica Group clone KCS635B12 Myb-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616493.10.0transcription factor MYB3R-2
RefseqXP_015616500.10.0transcription factor MYB3R-2
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLI1NT750.0I1NT75_ORYGL; Uncharacterized protein
STRINGORGLA01G0306500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-108myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]