PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0291600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 267aa    MW: 29779 Da    PI: 8.9145
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0291600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY781.1e-2452112258
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnh 58 
                        +Dgy+WrKYGqK+++g+ fpr YYrCt++   gCp+ k+ve+  +edp ++ ++Y++eH++
  ORGLA01G0291600.1  52 HDGYQWRKYGQKMIRGNSFPRCYYRCTYHqdhGCPASKHVEQHnSEDPPLFRVIYTNEHTC 112
                        7***************************98999*******9852689************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.4E-2542113IPR003657WRKY domain
SuperFamilySSF1182904.84E-2345114IPR003657WRKY domain
SMARTSM007741.9E-3651114IPR003657WRKY domain
PfamPF031067.1E-2553112IPR003657WRKY domain
PROSITE profilePS5081120.31253115IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVKRSDNMDS SSECSRGAHK RLLQDSRSYE QENAMKKVCI GTRTEYTYAP YHDGYQWRKY  60
GQKMIRGNSF PRCYYRCTYH QDHGCPASKH VEQHNSEDPP LFRVIYTNEH TCGTSNSASD  120
YMASSMQIQQ IADASLRKTQ AAERLRKAEV ETPRLMHSPP PRCSGGYNMA MKEEKDVIVS  180
SLLTVIRGCH IAESAGNNSA AALPANRPPP AVARSDHHSX LQLCDFAXIV AGVRRPDTGL  240
HAGFSTGSPL GRASGFGLVQ RIHAHWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-12531121068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0291600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033020.0AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642042.11e-161probable WRKY transcription factor 64
TrEMBLI1NSS60.0I1NSS6_ORYGL; Uncharacterized protein
STRINGORGLA01G0291600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118143139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-19WRKY DNA-binding protein 55