PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0285000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 401aa    MW: 45503 Da    PI: 5.9151
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0285000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.37.9e-291062433127
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratk.sgyWkatgkdkev 92 
                        pG+rF P+d el+ ++L++k++g++l+  + ++ +d+y+ +P++L +k+   +e +wy Fs+r++ky++gkr++r+t   g+Wk+t k+++v
  ORGLA01G0285000.1 106 PGIRFVPSDIELILDFLRPKLRGEQLPSYSYMHVCDVYSDHPKELTSKLGPsREGNWYMFSPRNRKYNKGKRPSRSTGqLGFWKSTTKNEAV 197
                        9***************************999**************9655541556********************66538************ PP

                NAM  93 lsk..kgelvglkktLvfy.........kgrapkgektdWvmheyr 127
                        l++  ++ l+g k  L+++         k +++++ kt W m e+ 
  ORGLA01G0285000.1 198 LDAlsDNMLIGYKACLTYHeydesmptpKLKKENAIKTPWKMWEFV 243
                        *99888889**********8887777766899999*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-37104271IPR003441NAC domain
PROSITE profilePS5100536.215104271IPR003441NAC domain
PfamPF023651.4E-14106243IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MAESSESAWP QQSQQLQISS TMPAGSAWPE EENLENLEQP LPLLMPSSED HREQQLVPVP  60
WLQQDQDQEW HEQEQFLLLK NQNQEQLQDQ QPLQDQEETR RYLGVPGIRF VPSDIELILD  120
FLRPKLRGEQ LPSYSYMHVC DVYSDHPKEL TSKLGPSREG NWYMFSPRNR KYNKGKRPSR  180
STGQLGFWKS TTKNEAVLDA LSDNMLIGYK ACLTYHEYDE SMPTPKLKKE NAIKTPWKMW  240
EFVCSNSNRP FDAEEKPMRL NDWVLCKVTN KDNKVTTKKF KPQRSKKPKK PKKLQQEEQP  300
QNQGIVIRQP SESSSASSSH QEIPGSSLPG AGGDAAAAAT AAAAAVDPMP LHMIPPSSWN  360
YFSTGVTADG IVMDDSTGVD SYGCVDGAGA LNFQRNIFYH R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-1710627417171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0285000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032470.0AP003247.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0425G02.
GenBankAP0032600.0AP003260.5 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0468B07.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639570.10.0protein ATAF2
TrEMBLI1NSL00.0I1NSL0_ORYGL; Uncharacterized protein
STRINGORGLA01G0285000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160681414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.12e-20NAC domain containing protein 47