PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0242900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 196aa    MW: 22531.8 Da    PI: 8.2045
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0242900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.41.6e-22958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krien ++rq tf kRr g++KKA EL vLCda+ ++++fs +gkly + 
  ORGLA01G0242900.1  9 KRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFL 58
                       79*********************************************996 PP
2K-box33.22.2e-1272170199
              K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                        y++++++++++   ++ + el+k+ +  + L++++R +  +d e+ ++  L+ Le++Le +++k+Rs K++ +  +i +lq+  +  qee  
  ORGLA01G0242900.1  72 YEATTHTKVWADIRQERRAELEKVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMRKVRSEKDRKIGGEICYLQNIIRGRQEERY 163
                        566778889*************************************************************************9999999999 PP

              K-box  93 aLrkkle 99 
                         L  k++
  ORGLA01G0242900.1 164 GLCDKIA 170
                        9988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.777161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-32160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.15E-27289IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-23323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-233859IPR002100Transcription factor, MADS-box
PfamPF014862.7E-1484169IPR002487Transcription factor, K-box
PROSITE profilePS5129710.18685175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGRGRSEIKR IENPTQRQST FYKRRDGLFK KARELAVLCD ADLLLLLFSA SGKLYHFLSP  60
TVPSVREFVE RYEATTHTKV WADIRQERRA ELEKVGSMCD LLEKQLRFMT VDDGEEYTVP  120
SLEALEHNLE AAMRKVRSEK DRKIGGEICY LQNIIRGRQE ERYGLCDKIA HAQTLKDVEC  180
GSTSLSNGLD LKLGFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-14190195MEF2 CHIMERA
6byy_B3e-14190195MEF2 CHIMERA
6byy_C3e-14190195MEF2 CHIMERA
6byy_D3e-14190195MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0242900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1776990.0AY177699.1 Oryza sativa (japonica cultivar-group) transcription factor MADS32 mRNA, complete cds.
GenBankHQ7118500.0HQ711850.1 Oryza sativa Indica Group chimeric floral organs 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642650.11e-144MADS-box transcription factor 32 isoform X1
SwissprotQ8S1511e-145MAD32_ORYSJ; MADS-box transcription factor 32
TrEMBLA0A0D3ETJ81e-142A0A0D3ETJ8_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YEF21e-142A0A0D9YEF2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FSJ11e-142A0A0E0FSJ1_ORYNI; Uncharacterized protein
TrEMBLA2WUN41e-142A2WUN4_ORYSI; Chimeric floral organs 1
TrEMBLI1NRD91e-142I1NRD9_ORYGL; Uncharacterized protein
STRINGOGLUM01G33550.11e-143(Oryza glumipatula)
STRINGOS01T0726400-001e-143(Oryza sativa)
STRINGONIVA01G33710.11e-143(Oryza nivara)
STRINGORGLA01G0242900.11e-143(Oryza glaberrima)
STRINGOBART01G29490.11e-143(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119233439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-23AGAMOUS-like 8
Publications ? help Back to Top
  1. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]