PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0167300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 260aa MW: 29104.3 Da PI: 9.0254 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 69.9 | 5.3e-22 | 29 | 130 | 3 | 101 |
DUF260 3 aaCkvlrrkCakdCvlapyfpa......eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 aa+++l+ a+d vla + pa +++ ++ n+++lFG++n+ ++++a+ +e+++d+mss+ yeA+++ar+P++ a+gv+++l++++e ORGLA01G0167300.1 29 AAMRHLQG--AEDGVLAGV-PArvilhgDEKVRLLNAQRLFGTRNIRHFVQATLPEKQDDLMSSIKYEAQVWARNPQSCATGVMWHLERKVE 117 66777766..555555544.332333347789************************************************************ PP DUF260 89 qlkaelallkeel 101 ++ a+l++l+++l ORGLA01G0167300.1 118 RELAKLSKLRQKL 130 ********99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 8.824 | 23 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.3E-17 | 47 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
STSATMVDNP SLAPKSSPLP PPPAAAVEAA MRHLQGAEDG VLAGVPARVI LHGDEKVRLL 60 NAQRLFGTRN IRHFVQATLP EKQDDLMSSI KYEAQVWARN PQSCATGVMW HLERKVEREL 120 AKLSKLRQKL EMCKNLAAKK SIPETKDVGV RQVTSKEQEQ ERQYQACPAR ISAWTPRLFV 180 HRSACEIPIS QTESRIACMQ FFGRAFMAFA GQIQEEAINH EAEDAHYDFF PLQAHLVLDS 240 PRNPHPLGRP PLTRSHNVHG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0167300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | I1NP83 | 0.0 | I1NP83_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0167300.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19872 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72980.1 | 7e-08 | LOB domain-containing protein 7 |