PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0056600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 215aa MW: 22877.9 Da PI: 9.0838 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.3 | 3.3e-38 | 27 | 81 | 4 | 58 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 + l+cprC+stntkfCyynny+l+qPr+fCkaCrryWt+GGalrnvPvGgg+r++ ORGLA01G0056600.1 27 EGLACPRCESTNTKFCYYNNYNLAQPRHFCKACRRYWTRGGALRNVPVGGGTRNK 81 6789*************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.0E-32 | 29 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.416 | 29 | 83 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 4.0E-23 | 31 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 31 | 67 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MEVAEGRTVA AAAGGGGLGG GARTEAEGLA CPRCESTNTK FCYYNNYNLA QPRHFCKACR 60 RYWTRGGALR NVPVGGGTRN KVAPAPCTGR RXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 120 VAYELPFLPP PPPLPLAAVD PDRRLLDLGG SFTSLLAPAQ LHNGHFTTGF LLGTMSSAPP 180 PPPPPPATST PSPAPAAHPP VSDSIWAMGW PHLSI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0056600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 1e-152 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645936.1 | 3e-81 | dof zinc finger protein DOF3.1 | ||||
TrEMBL | I1NL26 | 1e-124 | I1NL26_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0056600.1 | 1e-125 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 2e-29 | DOF zinc finger protein 1 |