PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0037700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 281aa    MW: 31610.6 Da    PI: 6.073
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0037700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.7e-1982131255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr++  +g+WvAeIr+p   + r +r +lg+f ta eAa a+++a+++++g
  ORGLA01G0037700.1  82 AYRGVRQRT-WGKWVAEIREP---N-RgRRLWLGSFPTALEAAHAYDEAARAMYG 131
                        59****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-1381131IPR001471AP2/ERF domain
PROSITE profilePS5103221.82582139IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2082140IPR016177DNA-binding domain
SMARTSM003804.1E-3382145IPR001471AP2/ERF domain
PRINTSPR003676.7E-98394IPR001471AP2/ERF domain
CDDcd000183.02E-3083141No hitNo description
Gene3DG3DSA:3.30.730.109.1E-3183140IPR001471AP2/ERF domain
PRINTSPR003676.7E-9105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MLFRFVSCNV QLCGIIELPH WVRKKRTRRK SDGPDSIAET IKWWKEQNQK LQEENSSRKA  60
PAKGSKKGCM AGKGGPENSN CAYRGVRQRT WGKWVAEIRE PNRGRRLWLG SFPTALEAAH  120
AYDEAARAMY GPTARVNFAD NSTDANSGCT SAPSLMMSNG PATIPSDEKD ELESPPFIMA  180
NGPAVLYRPD KKDVLERVVP EVQDVKTEGS NGLKRVCQEQ KTMEVCESEG IVLHKEVNIS  240
YDYFNVHEVV EMIIVELSAD QKTEVHEEYQ EGDDGFSLFS Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1483138359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0037700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankHM8073640.0HM807364.1 Oryza sativa Indica Group DREB-like protein (DREB1) gene, complete cds.
GenBankJQ3410590.0JQ341059.1 Oryza sativa Indica Group cultivar Pokkali dehydration responsive element binding protein 2a (DREB2A) mRNA, complete cds.
GenBankKU1597410.0KU159741.1 Oryza glaberrima clone 1 DREB2A transcription factor gene, complete cds.
GenBankKU1597420.0KU159742.1 Oryza glaberrima clone 2 DREB2A transcription factor gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878770.10.0dehydration-responsive element-binding protein 2A
SwissprotA2WL190.0DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLI1NKI70.0I1NKI7_ORYGL; Uncharacterized protein
STRINGORGLA01G0037700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.14e-35ERF family protein