PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0005100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 224aa MW: 24288.4 Da PI: 9.7726 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26 | 1.6e-08 | 32 | 85 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C......TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.as...kapskKlsKaeiLekAveYIksL 54 +e+ErrRR++++ +L +l+P+ + k ++ + L +A YIk+L ORGLA01G0005100.1 32 RKEMERRRRQDMKGLCVKLASLIPNeHCsksKMQGATRTQLGSLDEAAAYIKKL 85 579**********************66699888888899*************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.245 | 27 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-11 | 31 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.42E-10 | 33 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-5 | 33 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-6 | 33 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MDQEKADGGG RRRRSRATRS SGSGASSTAA ERKEMERRRR QDMKGLCVKL ASLIPNEHCS 60 KSKMQGATRT QLGSLDEAAA YIKKLKERVD ELHHKRSMMS ITSSRCRSGG GVPAAAAGQS 120 TSGGGGEEEE DMTRTTAAAA VVEVRQHVQE GSLISLDVVL ICSAARPVKF HDVITVLEEE 180 GADIISANFS LAAHNFYYTI YSRAFSSRIG IEASRISERL RALV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0005100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647782.1 | 1e-109 | transcription factor bHLH167 isoform X2 | ||||
Refseq | XP_015647790.1 | 1e-109 | transcription factor bHLH167 isoform X3 | ||||
Refseq | XP_015647799.1 | 1e-109 | transcription factor bHLH167 isoform X3 | ||||
TrEMBL | A0A0D3EIR1 | 1e-160 | A0A0D3EIR1_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G00600.1 | 1e-161 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10586.1 | 2e-14 | bHLH family protein |