PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB12G26370.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 345aa MW: 38601.1 Da PI: 9.242

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB12G26370.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152.2	2.4e-47	40	178	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvkaeekew.yfFskrdkkyatgkrknratksgyWkatgk 88 pGfrFhPtd+elv +yL++kve+k++++ ++ike+diyk++PwdLpk + +++eke+ yfF+ r +ky+++ r+nr+t sg+Wkatg OB12G26370.1 40 FPGFRFHPTDQELVRFYLTRKVEKKPFSI-DIIKELDIYKHDPWDLPKashgvvlqgSSSTTEKECrYFFCLRGRKYRNSIRPNRVTGSGFWKATGI 135 69*************************.99***********66888887663334556667************************** PP NAM 89 dkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+++s +g +glkk+Lv+y+g+a +g+ktdW+mhe+rl OB12G26370.1 136 DKPIFSLtgaGGDCIGLKKSLVYYRGSAGRGTKTDWMMHEFRL 178 *987767777*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	50.006	39	203	IPR003441	NAC domain
SuperFamily	SSF101941	8.63E-51	39	203	IPR003441	NAC domain
Pfam	PF02365	1.5E-23	41	178	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MKDKRLERII KESGSPGSAG TGSAALAGVE EDLQDDDLVF PGFRFHPTDQ ELVRFYLTRK 60 VEKKPFSIDI IKELDIYKHD PWDLPKASHG VVLQGSSSTT EKECRYFFCL RGRKYRNSIR 120 PNRVTGSGFW KATGIDKPIF SLTGAGGDCI GLKKSLVYYR GSAGRGTKTD WMMHEFRLPS 180 SSPAPDHPAA ANEIWTICRI FKRSTSYTKG RAAAASMNKR SHHHQLQHMQ HIQQQQHYYH 240 HDHYRRHYAS MAAATNSVAV ESSDAETTRS QLPQPYCHVD LADIRHHRQS APFMLDFHAG 300 ASSSSSLSST GWSELVSLRD GGGSSGNSSW DELGRIMEIS TNSPN

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MKDKRLERII KESGSPGSAG TGSAALAGVE EDLQDDDLVF PGFRFHPTDQ ELVRFYLTRK  60
VEKKPFSIDI IKELDIYKHD PWDLPKASHG VVLQGSSSTT EKECRYFFCL RGRKYRNSIR  120
PNRVTGSGFW KATGIDKPIF SLTGAGGDCI GLKKSLVYYR GSAGRGTKTD WMMHEFRLPS  180
SSPAPDHPAA ANEIWTICRI FKRSTSYTKG RAAAASMNKR SHHHQLQHMQ HIQQQQHYYH  240
HDHYRRHYAS MAAATNSVAV ESSDAETTRS QLPQPYCHVD LADIRHHRQS APFMLDFHAG  300
ASSSSSLSST GWSELVSLRD GGGSSGNSSW DELGRIMEIS TNSPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-43	41	209	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-43	41	209	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-43	41	209	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-43	41	209	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-43	41	209	22	174	NAC domain-containing protein 19
3swm_B	2e-43	41	209	22	174	NAC domain-containing protein 19
3swm_C	2e-43	41	209	22	174	NAC domain-containing protein 19
3swm_D	2e-43	41	209	22	174	NAC domain-containing protein 19
3swp_A	2e-43	41	209	22	174	NAC domain-containing protein 19
3swp_B	2e-43	41	209	22	174	NAC domain-containing protein 19
3swp_C	2e-43	41	209	22	174	NAC domain-containing protein 19
3swp_D	2e-43	41	209	22	174	NAC domain-containing protein 19
4dul_A	2e-43	41	209	19	171	NAC domain-containing protein 19
4dul_B	2e-43	41	209	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB12G26370.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003829	1e-79	AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
GenBank	AP004314	1e-79	AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBank	AP014963	1e-79	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	1e-79	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006664770.1	0.0	PREDICTED: protein FEZ-like
Swissprot	Q9SK55	7e-75	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	J3NF79	0.0	J3NF79_ORYBR; Uncharacterized protein
STRING	OB12G26370.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	4e-71	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]