PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G26180.1
Common NameLOC102706898
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 309aa    MW: 34639.1 Da    PI: 6.058
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G26180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.85.5e-17239273135
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  OB12G26180.1 239 CTHCMSYKTPQWRTGPLGPKTLCNACGVRYKSGRL 273
                   *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0064154203IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.3E-4158198IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.398233269IPR000679Zinc finger, GATA-type
SMARTSM004012.0E-14233287IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.42E-14237296No hitNo description
Gene3DG3DSA:3.30.50.104.4E-13238271IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.98E-13238295No hitNo description
PfamPF003209.5E-15239273IPR000679Zinc finger, GATA-type
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MLMDVHPPSA PASSLADLFP HQPAVESDGS GIEWLSVYVE DCLSTSASCT NPVSAELAPI  60
TMASQGTAKP KLPPRPSSHA RKRKRSLASV ISDTDDQHCI TLFVEPPLLL LDHKDWLAES  120
ELILPKKDKD EGLVQQQEQE EDEELVQQQE QEEEELAINC SYCLSSQSPQ WWDGPSGPTC  180
DACRLRIEAE NGLTTISKKR YGQEIDKEQE IEKRRDKKKI KKAVYVNDEL PPEEPVKRCT  240
HCMSYKTPQW RTGPLGPKTL CNACGVRYKS GRLLPEYRPA NSPTFVSDIH SNSHKKVMQL  300
RQSVSHPGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213221RRDKKKIKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G26180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1014210.0AK101421.1 Oryza sativa Japonica Group cDNA clone:J033038C04, full insert sequence.
GenBankEU8470160.0EU847016.1 Oryza sativa Japonica Group clone KCS030C12 GATA zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664221.20.0PREDICTED: GATA transcription factor 2-like
TrEMBLJ3NF600.0J3NF60_ORYBR; Uncharacterized protein
STRINGOB12G26180.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59623656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.13e-35GATA transcription factor 4