PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB12G25370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WOX | ||||||||
Protein Properties | Length: 160aa MW: 18085.1 Da PI: 11.7876 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.1 | 7.3e-09 | 59 | 95 | 25 | 57 |
--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 25 psaeereeLAkkl....gLterqVkvWFqNrRakekk 57 p ++++ ++ +l +++ ++V++WFqN++a +++ OB12G25370.1 59 PPYRQKTAITVRLrehgHIEGKNVFYWFQNHKAHQRQ 95 56677888888889999****************9996 PP | |||||||
2 | Wus_type_Homeobox | 58.2 | 2e-19 | 57 | 97 | 25 | 65 |
Wus_type_Homeobox 25 rtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r P+ ++ + it +L+e+G+ie+kNVfyWFQN+ka +rqkq OB12G25370.1 57 RCPPYRQKTAITVRLREHGHIEGKNVFYWFQNHKAHQRQKQ 97 6799999********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.64E-5 | 57 | 102 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.0E-6 | 59 | 95 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MLAPRPEIFS VLFFRRRKHI ARSPSRACAR SLAASPPSRA CRPVPCSGVR SPAYHRRCPP 60 YRQKTAITVR LREHGHIEGK NVFYWFQNHK AHQRQKQKQQ SFDYFSKLFR CPSSLPVLHR 120 PLVHPFPLTV PPAKPLPPSA PTACNTGGGG GEVKVLLLTF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB12G25370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM490235 | 2e-33 | AM490235.1 Zea mays mRNA for putative wuschel homeobox protein (wox2A gene). | |||
GenBank | BT037009 | 2e-33 | BT037009.1 Zea mays full-length cDNA clone ZM_BFb0151I01 mRNA, complete cds. | |||
GenBank | EU954062 | 2e-33 | EU954062.1 Zea mays clone 1453569 homeobox domain containing protein mRNA, complete cds. | |||
GenBank | KJ728384 | 2e-33 | KJ728384.1 Zea mays clone pUT6667 HB transcription factor (HB94) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006646469.1 | 1e-29 | PREDICTED: WUSCHEL-related homeobox 5-like, partial | ||||
TrEMBL | J3NEX9 | 1e-112 | J3NEX9_ORYBR; Uncharacterized protein | ||||
STRING | OB12G25370.1 | 1e-112 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7509 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 3e-08 | WUSCHEL related homeobox 2 |