PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G24270.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 336aa    MW: 38664.6 Da    PI: 7.3721
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G24270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.6e-1529115295
                   EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                   fk l     +++g +++p k ae ++g+ ++    +l+++sg++W+v +  +k  ++ ++ +GW++F+ka++L+e+D + F+ +g+ ++++ + 
  OB12G24270.1  29 FKLL--TGDFAHG-ISIPEKVAEVFSGQITK--GFKLKSPSGETWRVGI--EKVADELLIMSGWEDFAKAHELQENDLLFFTCNGHGNGSCSFD 115
                   5555..4455555.9*******999888555..59999***********..*******************************887766655554 PP
2B339.31.2e-12238326998
                   HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
            B3   9 dvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                      +   l++p kfa++h ++  +s ++ l    + ++W vk+ y ++ +r +    W +F ++n+L+eg +++F+l++  ++ +++v+v+ 
  OB12G24270.1 238 EREEIFSLIVPSKFAADHLEN--RSHEILLIRpNKKEKWYVKY-YHGSTNRGFNCHRWIKFMRENRLREGYICIFELMKGaRRVTMTVHVIG 326
                   455567899*********544..45567766636779******.7666666555668*******************9977799999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-1721124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.94225122IPR003340B3 DNA binding domain
CDDcd100171.11E-1327120No hitNo description
Gene3DG3DSA:2.40.330.107.9E-1727124IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.5E-828122IPR003340B3 DNA binding domain
PfamPF023622.6E-1228113IPR003340B3 DNA binding domain
PROSITE profilePS5086311.011230328IPR003340B3 DNA binding domain
SMARTSM010190.0023233328IPR003340B3 DNA binding domain
PfamPF023629.0E-11238326IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-14238326IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-15240326IPR015300DNA-binding pseudobarrel domain
CDDcd100178.88E-12243325No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAEKGCESCS KWQEHYYREH MDVSRIRFFK LLTGDFAHGI SIPEKVAEVF SGQITKGFKL  60
KSPSGETWRV GIEKVADELL IMSGWEDFAK AHELQENDLL FFTCNGHGNG SCSFDVLMFD  120
ASGCEKMCCF FTGKKDSYMC KHFDSRGGQN AEQCLSTDSE DTSTPSHLIR SPYSTSKKSS  180
GKTKTNPRNA PENPNSSRCH VKREMFEEEK SGDNDDNGDD EHVDHHYSRL ANYLTSEERE  240
EIFSLIVPSK FAADHLENRS HEILLIRPNK KEKWYVKYYH GSTNRGFNCH RWIKFMRENR  300
LREGYICIFE LMKGARRVTM TVHVIGKVGN RFVLLG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G24270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9548291e-120AL954829.6 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-120AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126201e-120CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698561.10.0PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT20.0Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLJ3NEL90.0J3NEL9_ORYBR; Uncharacterized protein
STRINGOB12G24270.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-24B3 family protein