PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G24260.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 488aa    MW: 56044.3 Da    PI: 9.1555
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G24260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.1e-1828115197
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   f+kv+     +k+g l++p kfa+++ g    + t+ le+++g++++v+l   k  +  vl++GW +F++a +L+ gD++vF ++g+s f  +v ++
  OB12G24260.1  28 FIKVM--IGDFKNG-LTIPEKFAQNFRGH--IPETINLETRNGNRYKVRL--VKELNNLVLRSGWAKFASAYELEKGDILVFIYSGNSHF--KVWIY 115
                   56666..6677777.********888655..5668***************..**********************************9999..66655 PP
2B344.62.6e-14242323790
                   .-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   7 psdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                    + + ++g l+++k++a ++ + ++e  t++l +  ++ +W++ l    ++++y +++GW +F ++n+L+egD++vF+ ++++++
  OB12G24260.1 242 DKASVTNGSLTISKDYAVRYLLHENE--TIKLCHsGRSMTWDISLD-IETDDQYAISTGWLDFIRDNHLQEGDTCVFEASKNKRE 323
                   556678889***********877656..677666366688888883.445556*************************8876444 PP
3B345.51.4e-1440748519100
                   -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
            B3  19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                     k+a+e+   ++eskt++l  ++ ++++ k+ ++ + + + l +GW++F  +n+Lk+gD+++F+l+++++ +++v+++rks
  OB12G24260.1 407 NAKYAAEYL--PRESKTMRLLLPK-KKYKCKVAFQINHRVHKLVGGWRKFIGDNKLKVGDVCLFQLMKNEKLTMLVHIIRKS 485
                   556666664..5678899988854.455555555999999***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-2321120IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-2323120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.05625118IPR003340B3 DNA binding domain
CDDcd100171.49E-2026116No hitNo description
PfamPF023621.0E-1628114IPR003340B3 DNA binding domain
SMARTSM010194.0E-1228118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-18229328IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-19230329IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-11235316No hitNo description
PROSITE profilePS5086312.52236334IPR003340B3 DNA binding domain
SMARTSM010197.0E-8238334IPR003340B3 DNA binding domain
PfamPF023628.2E-12239323IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-18380485IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-19381485IPR015300DNA-binding pseudobarrel domain
CDDcd100172.41E-14386483No hitNo description
SMARTSM010197.9E-6388485IPR003340B3 DNA binding domain
PfamPF023628.6E-13408484IPR003340B3 DNA binding domain
PROSITE profilePS508639.784429485IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MMEKSHSACK NCVIDHYWHH MDDHGKSFIK VMIGDFKNGL TIPEKFAQNF RGHIPETINL  60
ETRNGNRYKV RLVKELNNLV LRSGWAKFAS AYELEKGDIL VFIYSGNSHF KVWIYDPSAC  120
EKELSCANME QFPYVQERSI SYDNHTRLRK KAKSANRYVD SSSYSRETLE ISPARSSWKS  180
TENVSSSEEH DEPVNSDCTQ KPTKSFCDLP RMCSMTNAQK AEVNALEKKI QPQIPFYITT  240
IDKASVTNGS LTISKDYAVR YLLHENETIK LCHSGRSMTW DISLDIETDD QYAISTGWLD  300
FIRDNHLQEG DTCVFEASKN KREVALIFHP LKQSLHSKPP GYAPSTRCPR NGISKPNYIV  360
TKFTTLSGKL EREVEAKVQA IQSEIPIFVA VMRDSCIRGN ASVLCFNAKY AAEYLPRESK  420
TMRLLLPKKK YKCKVAFQIN HRVHKLVGGW RKFIGDNKLK VGDVCLFQLM KNEKLTMLVH  480
IIRKSEYC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147153LRKKAKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G24260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664156.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like
SwissprotQ2QMT60.0Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLJ3NEL80.0J3NEL8_ORYBR; Uncharacterized protein
STRINGOB12G24260.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-22B3 family protein