PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G24200.1
Common NameLOC102711659
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 304aa    MW: 33097.5 Da    PI: 4.7816
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G24200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.9e-112322721055
                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   r+RR+riN+++ +L+ l+P+      +K++ +++Le+Av+Y+k Lq
  OB12G24200.1 232 RKRRERINERLKTLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 272
                   9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.205222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14226288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-13227285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-12228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.19E-13231276No hitNo description
PfamPF000102.1E-8232272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
METGGLISDM SWTVFDFPSH GDESEMMAQL LSAFPIHGEE EGQQELPWFD QSPNPCYYNC  60
NASSTAYSNS NASSLAAPSE YEGYCLSDSN ETLGVSSSIA PHDPSMVQVQ GAPEFLNVIP  120
NHSLDSFGNG EPSREGLDSA GVTKKRKHSA EEEFDCQTRV SKCTKKAEPK RAKKAKQSGQ  180
KDANATIPNG SCSSSDNDSS SSQEAADAGA TSKGKSRASQ GAATDPQSLY ARKRRERINE  240
RLKTLQNLVP NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DEMWMYAPIA YNGMNIGLDL  300
NIDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G24200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126201e-146CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664155.10.0PREDICTED: transcription factor bHLH84-like
TrEMBLJ3NEL20.0J3NEL2_ORYBR; Uncharacterized protein
STRINGOB12G24200.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-52bHLH family protein