PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G22490.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 290aa    MW: 33044.3 Da    PI: 5.2875
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G22490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.9e-13756148
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                     r++WT eEd++l++ +++   g  +W + ++ +g+ R++k+c srw++yl
     OB12G22490.1  7 RLKWTSEEDDKLIRFIQENEEGtwNWGSLPKQVGLMRSAKSCNSRWNDYL 56
                     89**********************************************97 PP
2Myb_DNA-binding38.72.3e-1262107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eEd+ ++ + +  G++ W+ Ia++++ +R+  ++k++w+ ++
     OB12G22490.1  62 RGNFTKEEDDTIASLQQAIGNR-WSIIAEYLP-RRSSIEIKNYWRHLK 107
                      89********************.*********.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.884256IPR017877Myb-like domain
SuperFamilySSF466891.95E-225103IPR009057Homeodomain-like
SMARTSM007176.8E-4658IPR001005SANT/Myb domain
PfamPF002492.0E-11756IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-15964IPR009057Homeodomain-like
CDDcd001671.46E-5956No hitNo description
PROSITE profilePS5129415.33857111IPR017930Myb domain
SMARTSM007175.5E-1261109IPR001005SANT/Myb domain
PfamPF002496.3E-1162106IPR001005SANT/Myb domain
CDDcd001674.02E-764107No hitNo description
Gene3DG3DSA:1.10.10.604.9E-1665110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MESGSKRLKW TSEEDDKLIR FIQENEEGTW NWGSLPKQVG LMRSAKSCNS RWNDYLRDKS  60
GRGNFTKEED DTIASLQQAI GNRWSIIAEY LPRRSSIEIK NYWRHLKKRV HWISNRNGRS  120
EIVVLPNSNI GEKKMDMSWE NESSTSTRSN AAGKELVRSV SNLEQLTIQE ANSFNNNVPG  180
STNLSNEGNN CKTDGEDLGF LHDFESYSFE DMSFSDNILD EDCNLNYGGY VSGSTACLNN  240
TTISGEGLAL PRESNWSDYK YTTMLNNSTE IDGLRSRRNR AEFTACRAHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-131010910106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G22490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698589.10.0PREDICTED: myb-related protein 305-like
RefseqXP_015698590.10.0PREDICTED: myb-related protein 305-like
RefseqXP_015698591.10.0PREDICTED: myb-related protein 305-like
TrEMBLJ3NE410.0J3NE41_ORYBR; Uncharacterized protein
STRINGOB12G22490.10.0(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.18e-33myb domain protein 15