PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB12G18970.1 | ||||||||
Common Name | LOC102711311 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 214aa MW: 24172.1 Da PI: 4.478 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65.6 | 1.4e-20 | 11 | 141 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiy....kvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 + GfrF+P+ +e+v++yL ++g++ ++ ++i+++d+y +veP +L +++++++ +fF+ ++ + +r +r++ +g+W a+ + OB12G18970.1 11 AIGFRFNPSPQEIVSYYLPLLIAGEQpEDTRDCIHHADVYgadmDVEPGRLAGrfapVARSTSSDRFFFTACRRVK---RRVSRIAGRGTWVAQST- 103 68*********************9994555677*****983333469****8435654445566889999999875...59***99******9976. PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v+++++ ++g kt+ f k+r ++ +dW+m+ey+ OB12G18970.1 104 TDVKNEEKVKIGELKTFKFKKERGRD-DYSDWLMEEYHC 141 7888889************9777766.89********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.1E-20 | 8 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.585 | 10 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.7E-14 | 12 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MASLSLDFLL AIGFRFNPSP QEIVSYYLPL LIAGEQPEDT RDCIHHADVY GADMDVEPGR 60 LAGRFAPVAR STSSDRFFFT ACRRVKRRVS RIAGRGTWVA QSTTDVKNEE KVKIGELKTF 120 KFKKERGRDD YSDWLMEEYH CHPGGEEAGD VEPVVCRIIR LDEFVRFVHD EPEAELLEES 180 LVDAILAPET QEEESSNPME GFVAPADGDE LLKS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB12G18970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664527.1 | 1e-157 | PREDICTED: NAC domain-containing protein 90-like | ||||
TrEMBL | J3ND39 | 1e-156 | J3ND39_ORYBR; Uncharacterized protein | ||||
STRING | OB12G18970.1 | 1e-157 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1832 | 27 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04400.1 | 6e-11 | NAC domain containing protein 77 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 102711311 |