PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G16310.1
Common NameLOC102711111
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 387aa    MW: 41077.1 Da    PI: 7.8339
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G16310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.36.2e-22290352163
                   XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                   e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++++++L++eN +L++e+++++ke+++l s++
  OB12G16310.1 290 ERELKRQRRKQSNRESARRSRLRKQAECEELAQRAEVLKQENASLRDEVNRIRKEYDELLSKN 352
                   89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077779.0E-29198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.8E-39139264No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-18284349No hitNo description
SMARTSM003383.0E-21290354IPR004827Basic-leucine zipper domain
PfamPF001701.5E-20290352IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.415292355IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.19E-11293349No hitNo description
CDDcd147022.36E-24295346No hitNo description
PROSITE patternPS000360297312IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGSSGADAPT KTTKASAPQE QQPPASSTAA TPAVYPDWAN FQGYPPIPPH GFFPSPVASS  60
PQGHPYMWGA QPMIPPYGTP PPPYVMYPPG VYAHPSMPLG THPFTPYAMT SPNGNTDPTG  120
TTTATAGGET DGKSSEGKEK SPIKRSKGSL GSLNMITGKN SAEHGKTSGA SANGAISQSG  180
ESGSDSSSEG SEANSQNDSH HKESGQEQDG EVRSSQNGVS RSPSQAKLNQ TMAIMPMPSG  240
GPVPAPTTNL NIGMDYWANT ASSTPAMTGK ATSAAAPGSM VPGEQWMQDE RELKRQRRKQ  300
SNRESARRSR LRKQAECEEL AQRAEVLKQE NASLRDEVNR IRKEYDELLS KNSSLKEKLG  360
DKQHKTDDAG VDNKLQHSGD DSQKKGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306312RRSRLRK
2306313RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G16310.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankOSU042950.0U04295.1 Oryza sativa Nipponbare bZIP DNA-binding factor (osZIP-1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663922.10.0PREDICTED: transcription factor HBP-1a-like
SwissprotB6E1070.0BZP1B_WHEAT; bZIP transcription factor 1-B
TrEMBLJ3NCC30.0J3NCC3_ORYBR; Uncharacterized protein
STRINGOB12G16310.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.17e-82basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]