PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB12G13360.1 | ||||||||
Common Name | LOC102708389 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 193aa MW: 21080.7 Da PI: 8.0837 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.2 | 1.1e-10 | 116 | 178 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 eke kr rr NRe+Ar +R++a +eL++kv+ L+++N+++kke e+ +e+ +lk + OB12G13360.1 116 EKEAKRLRRVLANRESARQTILRRQAIRDELARKVADLSTQNESMKKERETVMQEYLSLKETN 178 89**********************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 6.6E-6 | 113 | 181 | No hit | No description |
Pfam | PF00170 | 3.8E-10 | 116 | 179 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 1.9E-12 | 116 | 180 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.14 | 118 | 181 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.81E-7 | 120 | 176 | No hit | No description |
CDD | cd14702 | 2.29E-11 | 121 | 171 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MSDHGGDGDM QRQCRRGVAV DVVELGAALA LADMAGAAVK PPPRPACAAQ DDEDEEMVAT 60 TRLTLQLGNN NNSNVGIQSS SCSSSGSSAG RPALPPPPSS STSYGPKLRH MLTEEEKEAK 120 RLRRVLANRE SARQTILRRQ AIRDELARKV ADLSTQNESM KKERETVMQE YLSLKETNKQ 180 LKEQAHHLSL SLF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB12G13360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006663833.1 | 1e-140 | PREDICTED: G-box-binding factor 1-like | ||||
TrEMBL | J3NBH8 | 1e-139 | J3NBH8_ORYBR; Uncharacterized protein | ||||
STRING | OB12G13360.1 | 1e-139 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3165 | 34 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19490.1 | 1e-15 | bZIP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102708389 |