PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB12G13350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 312aa MW: 33960.2 Da PI: 8.4639 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 131 | 8.5e-41 | 10 | 142 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk...kvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +pGfrF Pt+eel+ +yL+++++g++ ++++vi+ vd+y+++P++L++ + a ++++w+fF++r++++ +g r+ r+t sgyWkatg+ OB12G13350.1 10 TPGFRFYPTEEELLGFYLRHRLAGTReRDVARVIPVVDVYSYHPSQLRSmagE--AsvrDKEQWFFFCPRAERELHGGRPARTTPSGYWKATGSPSW 104 69********************99986777789**************843452..13335669********************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s+ +++++g+k+t+vfy+grap+g+kt+W m+ey++ OB12G13350.1 105 VFSAsTTRVIGVKRTMVFYQGRAPTGTKTRWKMNEYKA 142 **9867788***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-43 | 4 | 149 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.335 | 9 | 195 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-22 | 11 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MVTMSDPMAT PGFRFYPTEE ELLGFYLRHR LAGTRERDVA RVIPVVDVYS YHPSQLRSMA 60 GEASVRDKEQ WFFFCPRAER ELHGGRPART TPSGYWKATG SPSWVFSAST TRVIGVKRTM 120 VFYQGRAPTG TKTRWKMNEY KAVAAAAADD PHTAAAAGAV LLPPMAPPSP PPPNASSACV 180 PLIRNELSVC RVYISTGTLR SFDRRPLDTP PTGRRDHHQA LQAVRQQQRR HADDALPSTV 240 AVAAAAVANA NLADVVVAGV EAEYSHSHDS SASSKDAAAI DWSSLITGTM TGDFSFNDID 300 FSSGGIEPWP QV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-27 | 2 | 143 | 6 | 143 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-27 | 2 | 143 | 6 | 143 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-27 | 2 | 143 | 6 | 143 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-27 | 2 | 143 | 6 | 143 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-27 | 2 | 143 | 9 | 146 | NAC domain-containing protein 19 |
3swm_B | 1e-27 | 2 | 143 | 9 | 146 | NAC domain-containing protein 19 |
3swm_C | 1e-27 | 2 | 143 | 9 | 146 | NAC domain-containing protein 19 |
3swm_D | 1e-27 | 2 | 143 | 9 | 146 | NAC domain-containing protein 19 |
3swp_A | 1e-27 | 2 | 143 | 9 | 146 | NAC domain-containing protein 19 |
3swp_B | 1e-27 | 2 | 143 | 9 | 146 | NAC domain-containing protein 19 |
3swp_C | 1e-27 | 2 | 143 | 9 | 146 | NAC domain-containing protein 19 |
3swp_D | 1e-27 | 2 | 143 | 9 | 146 | NAC domain-containing protein 19 |
4dul_A | 1e-27 | 2 | 143 | 6 | 143 | NAC domain-containing protein 19 |
4dul_B | 1e-27 | 2 | 143 | 6 | 143 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB12G13350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664351.1 | 0.0 | PREDICTED: NAC domain-containing protein 90-like | ||||
TrEMBL | J3NBH7 | 0.0 | J3NBH7_ORYBR; Uncharacterized protein | ||||
STRING | OB12G13350.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 4e-61 | NAC domain containing protein 90 |