PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G11510.1
Common NameLOC102712125
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 371aa    MW: 40708.6 Da    PI: 8.2128
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G11510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1652.7e-51211521128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                   lppGfrFhPtd+e++  yL +k  + +++    i +vd++k+ePwdLp+k++ +ekew+fF++r  ky+tg r+nratk+gyWkatgkd+e+++   
  OB12G11510.1  21 LPPGFRFHPTDDEVILSYLLQKFLNPSFTS-LPIGDVDLNKCEPWDLPSKARMGEKEWFFFAHRGMKYPTGLRTNRATKEGYWKATGKDREIFKPss 116
                   79*************************888.56***************999999***************************************9988 PP

           NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++lvg+kktLvfykgrapkg+kt+Wvmhe+rl
  OB12G11510.1 117 nggSKQLVGMKKTLVFYKGRAPKGSKTNWVMHEFRL 152
                   8877788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-5919179IPR003441NAC domain
PROSITE profilePS5100555.3921179IPR003441NAC domain
PfamPF023652.3E-2522152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MVETTANSLV KSEQDGVGLF LPPGFRFHPT DDEVILSYLL QKFLNPSFTS LPIGDVDLNK  60
CEPWDLPSKA RMGEKEWFFF AHRGMKYPTG LRTNRATKEG YWKATGKDRE IFKPSSNGGS  120
KQLVGMKKTL VFYKGRAPKG SKTNWVMHEF RLHANLHNHN PNLRLNPKDE WVVCKVFHKK  180
GDEATQMQAT TVEDVSAGTP NNGSYVEAND DVIADYFFQL DSVDPSIYFS SPAASSSLSA  240
PPDNDAVPYS SVAANGATPT TTSTTNGSFQ LPNYSVSGVS SWNNMPTPGA AAGVVLHGHG  300
SSYSLQHQAA MVKALEDVIR VPDFGTVQMP SSNKGLPTRS ATAGALQQNY PLGMPHYKLQ  360
NYGDTYLRDR S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-481918015166NO APICAL MERISTEM PROTEIN
1ut4_B1e-481918015166NO APICAL MERISTEM PROTEIN
1ut7_A1e-481918015166NO APICAL MERISTEM PROTEIN
1ut7_B1e-481918015166NO APICAL MERISTEM PROTEIN
3swm_A1e-481918018169NAC domain-containing protein 19
3swm_B1e-481918018169NAC domain-containing protein 19
3swm_C1e-481918018169NAC domain-containing protein 19
3swm_D1e-481918018169NAC domain-containing protein 19
3swp_A1e-481918018169NAC domain-containing protein 19
3swp_B1e-481918018169NAC domain-containing protein 19
3swp_C1e-481918018169NAC domain-containing protein 19
3swp_D1e-481918018169NAC domain-containing protein 19
4dul_A1e-481918015166NAC domain-containing protein 19
4dul_B1e-481918015166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G11510.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663769.10.0PREDICTED: NAC domain-containing protein 77-like
SwissprotQ5CD171e-156NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLJ3NAZ30.0J3NAZ3_ORYBR; Uncharacterized protein
STRINGOB12G11510.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.25e-72Arabidopsis NAC domain containing protein 87