PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G11500.1
Common NameLOC102711845
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 388aa    MW: 43056.4 Da    PI: 6.9302
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G11500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.15e-5161331128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                   lppGfrFhPtdeel+v+yL +++++  +++  +i+ev+iyk++PwdLp+k+  +ekewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++l++ +
  OB12G11500.1   6 LPPGFRFHPTDEELIVHYLMNQAASMACPV-PIIAEVNIYKCNPWDLPAKALFGEKEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKAILATpT 101
                   79****************************.88***************8878899**************************************9988 PP

           NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++ + +kk Lvfykg+ pkg ktdW+mheyrl
  OB12G11500.1 102 SHSIAVKKALVFYKGKPPKGLKTDWIMHEYRL 133
                   999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-612168IPR003441NAC domain
PROSITE profilePS5100557.4066168IPR003441NAC domain
PfamPF023651.5E-257133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MAMPALPPGF RFHPTDEELI VHYLMNQAAS MACPVPIIAE VNIYKCNPWD LPAKALFGEK  60
EWYFFSPRDR KYPNGARPNR AAGSGYWKAT GTDKAILATP TSHSIAVKKA LVFYKGKPPK  120
GLKTDWIMHE YRLTPASPAN CNTPKQRRGS SSMTMRLDDW VLCRIHKKSN DFSSSDQQEE  180
QDQPEGSTVE QQEDNNSCSE LAPTAEHSEQ PPFQPMAASS MSKSCSLTDL LNTIDCAALS  240
QLLLDGSSDM VSEPPAPPSP LIYTNPCQTQ TVLNYNMNNN NNIPHVLEAR LDHHDGYVNN  300
YHGLRRKRMM ACSGGSTSFD DGSEFVQQVA KKPLLPSGSR GSGFGGGYCN QQLAETTTTF  360
QFQNGNLLSH PFPLNQQQLL LNNHLQMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-72617415174Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G11500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU1675470.0KU167547.1 Oryza sativa cultivar Moctuyen transcription factor (NAC10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663768.10.0PREDICTED: NAC transcription factor 29-like
TrEMBLJ3NAZ20.0J3NAZ2_ORYBR; Uncharacterized protein
STRINGOB12G11500.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-81NAC domain containing protein 47