PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB12G11040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 213aa MW: 23695.7 Da PI: 9.2952 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 70.5 | 2.3e-22 | 110 | 173 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 Dgy+WrKYGqK+++g+++prsYYrCt + gC +kk v+r+++ + ++ Y +eH+++ OB12G11040.1 110 DGYQWRKYGQKQIEGAKYPRSYYRCTNStdqGCGAKKTVQRNDDGGgggaARYTVAYISEHTCK 173 9*************************988889**********9654232256788999999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-24 | 93 | 174 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.03E-21 | 101 | 173 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.1E-29 | 108 | 174 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-23 | 110 | 173 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.29 | 110 | 151 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MEAAYWCRVV GRERELQHLL FPTPTTAAAL ADTTAVGGER LPPGLATKIV SRGRKRLRDK 60 NNIVLKLRLD DADDQEMAAD GRDEPLRCSK TRRKQQSTTS TMVTTVPDFD GYQWRKYGQK 120 QIEGAKYPRS YYRCTNSTDQ GCGAKKTVQR NDDGGGGGAA RYTVAYISEH TCKSVESVAP 180 VILETTIVPT AGRAAGTVSV FVGYHHYYME QHW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-16 | 110 | 173 | 10 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB12G11040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 1e-32 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616434.1 | 7e-61 | probable WRKY transcription factor 33 | ||||
TrEMBL | J3NAU6 | 1e-158 | J3NAU6_ORYBR; Uncharacterized protein | ||||
STRING | OB12G11040.1 | 1e-158 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5760 | 30 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 4e-15 | WRKY DNA-binding protein 70 |