PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G28180.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 297aa    MW: 32898.3 Da    PI: 8.7587
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G28180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000126688123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y+C+ C + F++   L  H+++H
  OB11G28180.1 66 YTCSFCQREFRSAQALGGHMNVH 88
                  9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.29E-764116No hitNo description
PROSITE profilePS5015711.2616693IPR007087Zinc finger, C2H2
SMARTSM003550.00316688IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-56689IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM003558897116IPR015880Zinc finger, C2H2-like
PfamPF139120.001699117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MNSTAAAMEQ RGGEHWGSMW ETASRRSIRP SALYSGGGSE PSWEEQAFAR DAAANLGGCV  60
WPPRFYTCSF CQREFRSAQA LGGHMNVHRR DRARLRHFCQ REFRSAQALG GHMNVHRRDR  120
ARLRQRSSSP GHEEEEEEGE DHQQQGRYYT SFSKPSSTTN NSTSNEDIGD DVLVGVTTTR  180
ASRSSATIIR ETIKKRVIVP VSATADDEED DSKEELGKRS KRRRRRLDLL PSCEGLMDHH  240
HQVANNKVLI TSAAAAASPA SSNSASALVD HQNQQAAVGV LDLELRLGTT PKTVARA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-126188229superman protein
2l1o_A2e-126188229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217225KRSKRRRRR
2220225KRRRRR
3220226KRRRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G28180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1330085e-60AC133008.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence.
GenBankAP0149675e-60AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126195e-60CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697754.11e-159PREDICTED: uncharacterized protein LOC102708482
TrEMBLJ3NAI20.0J3NAI2_ORYBR; Uncharacterized protein
STRINGOB11G28180.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP174901111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-24zinc-finger protein 10