PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB11G27320.1 | ||||||||
Common Name | LOC102720835 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 296aa MW: 33840.7 Da PI: 5.8032 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.8e-17 | 34 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ l++++ +G g+W++ ar g++Rt+k+c++rw++yl OB11G27320.1 34 RGPWTVDEDLTLINYISDHGEGRWNALARAAGLKRTGKSCRLRWLNYL 81 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.3 | 3.5e-18 | 87 | 130 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++ OB11G27320.1 87 RGNFTAEEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 130 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.194 | 29 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-30 | 32 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-14 | 33 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 34 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-23 | 35 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.13E-10 | 36 | 81 | No hit | No description |
PROSITE profile | PS51294 | 24.451 | 82 | 136 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-16 | 86 | 134 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 87 | 130 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.57E-11 | 89 | 130 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-25 | 89 | 135 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 296 aa Download sequence Send to blast |
MEMVLKRSGG GMACHQHRPA EQQEPAELSA ELRRGPWTVD EDLTLINYIS DHGEGRWNAL 60 ARAAGLKRTG KSCRLRWLNY LRPDVKRGNF TAEEQLLILD LHSRWGNRWS KIAQHLPGRT 120 DNEIKNYWRT RVQKHAKQLN CDINSKRFKD AMKYLWMPRL VERIHASTGP GDDNIGPDDD 180 GSGDYGNNDL SCISGVTMAT IATCFEGSPS MVMSSSSDSI TSESQDLQKI NLHVHGGDEK 240 MSSRDWMQEV DHEFWSTQIQ PNNEQFQDQE LNGWVQGFSE GMSESLWSLE DIWKMQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-26 | 28 | 134 | 21 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB11G27320.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY026332 | 1e-173 | AY026332.1 Oryza sativa Myb transcription factor JAMyb mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006663109.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q2QZJ8 | 1e-173 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | J3NA96 | 0.0 | J3NA96_ORYBR; Uncharacterized protein | ||||
STRING | OB11G27320.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G48000.1 | 1e-80 | myb domain protein 112 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 102720835 |
Publications ? help Back to Top | |||
---|---|---|---|
|