PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G23060.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 283aa    MW: 31121 Da    PI: 7.8659
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G23060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd +lv +++q+G+g+W+++++  g+ R+ k+c++rw +yl
     OB11G23060.1 16 KGPWKPEEDIILVSYIQQHGPGNWRSVPENTGLMRCSKSCRLRWTNYL 63
                     79********************************************97 PP
2Myb_DNA-binding47.44.3e-1569114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+ E+ +++++ ++lG++ W++Ia++++  Rt++++k++w+++l
     OB11G23060.1  69 RGNFTPHEEGIIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 114
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.6871167IPR017930Myb domain
SuperFamilySSF466891.71E-2913110IPR009057Homeodomain-like
SMARTSM007171.9E-121565IPR001005SANT/Myb domain
PfamPF002495.1E-151663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-231770IPR009057Homeodomain-like
CDDcd001675.03E-111863No hitNo description
PROSITE profilePS5129419.14868118IPR017930Myb domain
SMARTSM007172.4E-1368116IPR001005SANT/Myb domain
PfamPF002492.3E-1369114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2471118IPR009057Homeodomain-like
CDDcd001676.90E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGRPPCCDNG GVGVKKGPWK PEEDIILVSY IQQHGPGNWR SVPENTGLMR CSKSCRLRWT  60
NYLRPGIKRG NFTPHEEGII IHLQALLGNK WAAIASYLPQ RTDNDIKNYW NTHLKKKVKR  120
LQQQQQPQTD HHHSFHTTNS NAAAAAATSC PNYYNPSSSS SSSTHIHSSH ESMQSMEPYP  180
SNEATTNTIP KLFQFQTWMK PSPASASAAN YNGAMAMQEF QDDQEVAAAA AMASSIDACK  240
DHTCAVIGDD KSSSLEMMMA AKMGHGEAGF LINLAEFALV IAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-241611827128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G23060.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1108441e-176AK110844.1 Oryza sativa Japonica Group cDNA clone:002-172-B09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662979.10.0PREDICTED: myb-related protein 306-like
SwissprotB3VTV72e-84MYB60_VITVI; Transcription factor MYB60
TrEMBLJ3N9200.0J3N920_ORYBR; Uncharacterized protein
STRINGOB11G23060.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.12e-74myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]