PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G21450.1
Common NameLOC102722259
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 285aa    MW: 31013 Da    PI: 7.3267
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G21450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.67.1e-34181491128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                   lp G+ F+Pt+ elvv+yL +++ + +l   ++i++vdi++++Pwd+   ++++ +  +fF+++++k + ++r+nra+ +g+W++tg + +v+++  
  OB11G21450.1  18 LPLGCAFRPTEGELVVNYLYRRAIQVPLAS-HFITDVDIMRHNPWDIV-PAEEKVTGKHFFTRKERKRPGDSRSNRAAGDGFWRSTGPEAAVYHNpg 112
                   699************************988.88**************5.456677899************************************988 PP

           NAM  96 ...kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                      ++ lvg+k+tLvf+ g +++++e+t+W m+e+rl
  OB11G21450.1 113 dsgGEVLVGMKRTLVFHYGkSSSSAESTEWAMQEFRL 149
                   8876777*********9873667789*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-3415152IPR003441NAC domain
PROSITE profilePS5100534.59418218IPR003441NAC domain
PfamPF023651.8E-1719149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAGPGVCIPL VNGRTMHLPL GCAFRPTEGE LVVNYLYRRA IQVPLASHFI TDVDIMRHNP  60
WDIVPAEEKV TGKHFFTRKE RKRPGDSRSN RAAGDGFWRS TGPEAAVYHN PGDSGGEVLV  120
GMKRTLVFHY GKSSSSAEST EWAMQEFRLA GCCLLPGHVT GPATGDSSNP SCISTQVTIA  180
MKNDGQDLSA AHTHDTPLGK TMVVEPDSSW LICRIYKKRQ RAPHVIIPPS IGDAREVVLA  240
LPAIVNAGRG RFRYVDFPGQ PSFEEGTDES PDVHDDKAAD GPGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-211614913140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G21450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697669.10.0PREDICTED: NAC transcription factor NAM-B1-like
TrEMBLJ3N8K90.0J3N8K9_ORYBR; Uncharacterized protein
STRINGOB11G21450.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-28NAC domain containing protein 83