PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB11G21440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 180aa MW: 19818.2 Da PI: 5.2464 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 112.9 | 3.3e-35 | 18 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 lppG+ F+Pt++elvv+yL +++ + +l++ ++i+++di +++Pwd + +++++ yfF+++++++ ++r nra+ +g+W++ g+d +v+ + OB11G21440.1 18 LPPGCVFRPTEDELVVHYLYRRAIQAPLPC-DFIADIDISRHNPWDVV-REEEKTNGRYFFTRKENNH-GDHRGNRAAGDGFWRSEGSDVPVYYNdg 111 79****************************.99**************6.445667799****999876.579**********************965 PP NAM 96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ lvg+k+tLvf+ +++p++++t Wvm+e+rl OB11G21440.1 112 daadGDMLVGMKRTLVFHCKSSPSAQRTGWVMQEFRL 148 55544555***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-37 | 14 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.486 | 18 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.3E-21 | 19 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MAGTGACITM ADGTTMRLPP GCVFRPTEDE LVVHYLYRRA IQAPLPCDFI ADIDISRHNP 60 WDVVREEEKT NGRYFFTRKE NNHGDHRGNR AAGDGFWRSE GSDVPVYYND GDAADGDMLV 120 GMKRTLVFHC KSSPSAQRTG WVMQEFRLAG ASLLPCPVMA DAAADGSNPS NNCTEATITQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-26 | 16 | 148 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB11G21440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015697668.1 | 1e-127 | PREDICTED: NAC transcription factor NAM-1-like | ||||
TrEMBL | J3N8K8 | 1e-133 | J3N8K8_ORYBR; Uncharacterized protein | ||||
STRING | OB11G21440.1 | 1e-134 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4482 | 23 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 7e-34 | NAC domain containing protein 83 |