PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G21390.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 694aa    MW: 73235.3 Da    PI: 6.5405
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G21390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS95.67.4e-303985191113
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..........sseelaalklfsev 87 
                   lv+lLl+cA++vs+gd+ +a + L  l+  asp gd+mqR+a+yf+ ALaarl+  +++ ++  pp+ + + +          s e+l+++++++++
  OB11G21390.1 398 LVHLLLACADMVSKGDQPAALRHLHLLRRVASPLGDSMQRVASYFADALAARLSL-SPSASAPPPPRLSLSPSasasplplppSPETLKVYQILYQA 493
                   68***************************************************98.5555555544433322235678999999************* PP

          GRAS  88 sPilkfshltaNqaIleavegeervH 113
                   +P++kf+h+taNqaI ea++ge+rvH
  OB11G21390.1 494 CPYIKFAHFTANQAIFEAFHGEDRVH 519
                   ************************** PP
2GRAS173.61.5e-53523693199374
          GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                   gEalaVn v +lhr++        + +++L++v++  Pk++++veqea hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ ll++ei+
  OB11G21390.1 523 GEALAVNAVNRLHRVP------GAHLPALLSMVRDQAPKIMTLVEQEAGHNGPYFLGRFLEALHYYSAIFDSLDATFPADSAARMKVEQCLLAPEIR 613
                   9**************9......334567********************************************************************* PP

          GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   nvvacegaer++rhe+le+Wr+ +e  GF++vpls  a+ q + ll  ++ +dgyr+ e+ g l+    dr+ +++SaWr
  OB11G21390.1 614 NVVACEGAERVARHERLERWRRLMEGRGFEAVPLSPAAVGQSQVLLGLYGaGDGYRLTEDGGRLLPRGPDRAPLAASAWR 693
                   *****************************************************************999999999*****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.049265672IPR005202Transcription factor GRAS
PfamPF035142.6E-27398519IPR005202Transcription factor GRAS
PfamPF035145.1E-51523693IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MAAGTKLQQQ QGPTSPTASV SESNIVASTV SAGPEANDAL AGLQALRFDG GGDIDDAEIQ  60
SPDIALWESI FADQIGASSG ADFLLSMSSA SPRRDFMACS PRREFMASSP KRDYMVTSSP  120
VRDYMVSSPK REYMVTSPRR EMVSSPRRTT FSNLYTTTSH GGGHHQSYVH GGGMEGAGHG  180
AQLLYSGLAG HGKGKSQSPL HKVYINNGGG GAHSSSSSHG GDGKSNTPST LSCSSSYVHG  240
AESDLPASLP SMDPFLEEGY LASYQLPDNA SGGAPAPAVT APSSSQQLPT LSECLAMPEP  300
AYRGGGEEAV TAAMAAGGLP VGALGHPGMY YGGGGGGGQF GEGMAPPLQH QMAKADQWAA  360
DSSLHSMLGS VVQSEAEQCS LVFHNNILNL EQDSGLQLVH LLLACADMVS KGDQPAALRH  420
LHLLRRVASP LGDSMQRVAS YFADALAARL SLSPSASAPP PPRLSLSPSA SASPLPLPPS  480
PETLKVYQIL YQACPYIKFA HFTANQAIFE AFHGEDRVHR RVGEALAVNA VNRLHRVPGA  540
HLPALLSMVR DQAPKIMTLV EQEAGHNGPY FLGRFLEALH YYSAIFDSLD ATFPADSAAR  600
MKVEQCLLAP EIRNVVACEG AERVARHERL ERWRRLMEGR GFEAVPLSPA AVGQSQVLLG  660
LYGAGDGYRL TEDGGRLLPR GPDRAPLAAS AWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-3040569225377Protein SCARECROW
5b3h_D2e-3040569225377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G21390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1363771e-141AC136377.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBa0028G07, complete sequence.
GenBankAC1377591e-141AC137759.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0008H02, complete sequence.
GenBankAP0149671e-141AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663470.20.0PREDICTED: DELLA protein DWARF8-like
TrEMBLJ3N8K30.0J3N8K3_ORYBR; Uncharacterized protein
STRINGOB11G21390.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92213141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-37RGA-like 2